Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26598 | 3' | -59.6 | NC_005357.1 | + | 17281 | 0.71 | 0.227553 |
Target: 5'- gCCGUcCACGa-AGCCGGCgCCGCgggCGCGc -3' miRNA: 3'- -GGUA-GUGCgcUCGGCUG-GGCGa--GCGC- -5' |
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26598 | 3' | -59.6 | NC_005357.1 | + | 18400 | 0.66 | 0.451376 |
Target: 5'- uCCGUCGCGuCGccuucgcugaauuGGCCGACgCGCccaccuUCGCc -3' miRNA: 3'- -GGUAGUGC-GC-------------UCGGCUGgGCG------AGCGc -5' |
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26598 | 3' | -59.6 | NC_005357.1 | + | 18508 | 0.71 | 0.2156 |
Target: 5'- aCCAUCACGCcuauGCCGGCauggaagCCGCgggCGUGg -3' miRNA: 3'- -GGUAGUGCGcu--CGGCUG-------GGCGa--GCGC- -5' |
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26598 | 3' | -59.6 | NC_005357.1 | + | 18556 | 0.69 | 0.299512 |
Target: 5'- uCgAUCACGUcGGUggaGGCCgCGCUCGCGg -3' miRNA: 3'- -GgUAGUGCGcUCGg--CUGG-GCGAGCGC- -5' |
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26598 | 3' | -59.6 | NC_005357.1 | + | 18896 | 0.71 | 0.233439 |
Target: 5'- gCCAUCGacCGCGugcGCCGccuggaagGCgCGCUCGCGg -3' miRNA: 3'- -GGUAGU--GCGCu--CGGC--------UGgGCGAGCGC- -5' |
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26598 | 3' | -59.6 | NC_005357.1 | + | 19085 | 0.69 | 0.284524 |
Target: 5'- -gGUCACGCGAuugcagGCCGGCCUGCgaacccuUCGgGu -3' miRNA: 3'- ggUAGUGCGCU------CGGCUGGGCG-------AGCgC- -5' |
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26598 | 3' | -59.6 | NC_005357.1 | + | 19225 | 0.66 | 0.433311 |
Target: 5'- gCCGaauUCAcCGaCGAGgCCGACCUGCugcugUCGCa -3' miRNA: 3'- -GGU---AGU-GC-GCUC-GGCUGGGCG-----AGCGc -5' |
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26598 | 3' | -59.6 | NC_005357.1 | + | 19895 | 0.66 | 0.442767 |
Target: 5'- aCCGgcaCGCGCGcGCUGcGCgUGCUCGCu -3' miRNA: 3'- -GGUa--GUGCGCuCGGC-UGgGCGAGCGc -5' |
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26598 | 3' | -59.6 | NC_005357.1 | + | 20353 | 0.67 | 0.412929 |
Target: 5'- gCCAUCGagcCGCGcGCCGACCgCGacccgagcaagCGCGa -3' miRNA: 3'- -GGUAGU---GCGCuCGGCUGG-GCga---------GCGC- -5' |
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26598 | 3' | -59.6 | NC_005357.1 | + | 20786 | 0.67 | 0.396701 |
Target: 5'- gCAUCAagGCGAguuucuacGCCGACCUguuccucauGCUCGCc -3' miRNA: 3'- gGUAGUg-CGCU--------CGGCUGGG---------CGAGCGc -5' |
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26598 | 3' | -59.6 | NC_005357.1 | + | 23322 | 0.72 | 0.178171 |
Target: 5'- aCCAUCuacccgaaggguuCGCaGGCCGGCCUGCaaUCGCGu -3' miRNA: 3'- -GGUAGu------------GCGcUCGGCUGGGCG--AGCGC- -5' |
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26598 | 3' | -59.6 | NC_005357.1 | + | 23424 | 0.67 | 0.396701 |
Target: 5'- cCgGUCAgUGCGAcGCCGGCCgGgaUGCGg -3' miRNA: 3'- -GgUAGU-GCGCU-CGGCUGGgCgaGCGC- -5' |
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26598 | 3' | -59.6 | NC_005357.1 | + | 23761 | 0.68 | 0.321971 |
Target: 5'- gCCGgcgcCAC-CGGGCCGAUgCGC-CGCGg -3' miRNA: 3'- -GGUa---GUGcGCUCGGCUGgGCGaGCGC- -5' |
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26598 | 3' | -59.6 | NC_005357.1 | + | 23860 | 0.66 | 0.442767 |
Target: 5'- gCCGUCAcCGCGAGCgCGGCCUcCaccgaCGUGa -3' miRNA: 3'- -GGUAGU-GCGCUCG-GCUGGGcGa----GCGC- -5' |
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26598 | 3' | -59.6 | NC_005357.1 | + | 25202 | 0.68 | 0.33763 |
Target: 5'- gCA-CGCGCGAccGCUGGCCCgGCUUGUu -3' miRNA: 3'- gGUaGUGCGCU--CGGCUGGG-CGAGCGc -5' |
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26598 | 3' | -59.6 | NC_005357.1 | + | 25301 | 0.66 | 0.442767 |
Target: 5'- -gGUCGUGCG-GCCGGCCCugccaccggcGCUCGUc -3' miRNA: 3'- ggUAGUGCGCuCGGCUGGG----------CGAGCGc -5' |
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26598 | 3' | -59.6 | NC_005357.1 | + | 25840 | 0.73 | 0.166297 |
Target: 5'- aCCAUCGCGUG-GUCGGCCuCGUccggCGCGu -3' miRNA: 3'- -GGUAGUGCGCuCGGCUGG-GCGa---GCGC- -5' |
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26598 | 3' | -59.6 | NC_005357.1 | + | 26246 | 0.68 | 0.359636 |
Target: 5'- gCGUCGC-CGAaggcacgggcacccGCCGGCCUggucgGCUCGCGc -3' miRNA: 3'- gGUAGUGcGCU--------------CGGCUGGG-----CGAGCGC- -5' |
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26598 | 3' | -59.6 | NC_005357.1 | + | 27820 | 0.68 | 0.362142 |
Target: 5'- uCC-UCGCGCGcGCUG-CCCGCgguggCGCc -3' miRNA: 3'- -GGuAGUGCGCuCGGCuGGGCGa----GCGc -5' |
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26598 | 3' | -59.6 | NC_005357.1 | + | 30129 | 0.69 | 0.285224 |
Target: 5'- gCCAgaaCACGCc-GCCGGCCUGCacCGCGu -3' miRNA: 3'- -GGUa--GUGCGcuCGGCUGGGCGa-GCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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