miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26598 3' -59.6 NC_005357.1 + 31249 0.67 0.405666
Target:  5'- aCCAUCACcaCG-GCCGACCagCGCaCGCa -3'
miRNA:   3'- -GGUAGUGc-GCuCGGCUGG--GCGaGCGc -5'
26598 3' -59.6 NC_005357.1 + 31325 0.67 0.405666
Target:  5'- aCCAaUugGcCGcAGCCGACaaggUGCUCGCGc -3'
miRNA:   3'- -GGUaGugC-GC-UCGGCUGg---GCGAGCGC- -5'
26598 3' -59.6 NC_005357.1 + 23424 0.67 0.396701
Target:  5'- cCgGUCAgUGCGAcGCCGGCCgGgaUGCGg -3'
miRNA:   3'- -GgUAGU-GCGCU-CGGCUGGgCgaGCGC- -5'
26598 3' -59.6 NC_005357.1 + 20786 0.67 0.396701
Target:  5'- gCAUCAagGCGAguuucuacGCCGACCUguuccucauGCUCGCc -3'
miRNA:   3'- gGUAGUg-CGCU--------CGGCUGGG---------CGAGCGc -5'
26598 3' -59.6 NC_005357.1 + 16275 0.67 0.396701
Target:  5'- gCAUCGCagacgGCGAGCCGcugcgccaaAUCUGC-CGCGa -3'
miRNA:   3'- gGUAGUG-----CGCUCGGC---------UGGGCGaGCGC- -5'
26598 3' -59.6 NC_005357.1 + 12853 0.67 0.387864
Target:  5'- gCCuggGCGCG-GCCGACCUGa-CGCGa -3'
miRNA:   3'- -GGuagUGCGCuCGGCUGGGCgaGCGC- -5'
26598 3' -59.6 NC_005357.1 + 38941 0.67 0.387864
Target:  5'- uCUggUACaGCGGGCCGucguuCUCGUUCGCGu -3'
miRNA:   3'- -GGuaGUG-CGCUCGGCu----GGGCGAGCGC- -5'
26598 3' -59.6 NC_005357.1 + 5349 0.67 0.379158
Target:  5'- gCAUCGCGCugcguGGCCG-CCUGCacCGCGc -3'
miRNA:   3'- gGUAGUGCGc----UCGGCuGGGCGa-GCGC- -5'
26598 3' -59.6 NC_005357.1 + 4528 0.67 0.379158
Target:  5'- aCGUgGCGUGcugggcGGUCGugCCGC-CGCGg -3'
miRNA:   3'- gGUAgUGCGC------UCGGCugGGCGaGCGC- -5'
26598 3' -59.6 NC_005357.1 + 34980 0.67 0.379158
Target:  5'- gCCAuUCGCGCGAagGCCGAagccgaaCUGCUgGCc -3'
miRNA:   3'- -GGU-AGUGCGCU--CGGCUg------GGCGAgCGc -5'
26598 3' -59.6 NC_005357.1 + 27820 0.68 0.362142
Target:  5'- uCC-UCGCGCGcGCUG-CCCGCgguggCGCc -3'
miRNA:   3'- -GGuAGUGCGCuCGGCuGGGCGa----GCGc -5'
26598 3' -59.6 NC_005357.1 + 26246 0.68 0.359636
Target:  5'- gCGUCGC-CGAaggcacgggcacccGCCGGCCUggucgGCUCGCGc -3'
miRNA:   3'- gGUAGUGcGCU--------------CGGCUGGG-----CGAGCGC- -5'
26598 3' -59.6 NC_005357.1 + 14618 0.68 0.345665
Target:  5'- gCAgcgCGCGCGAGgaCGugCUGCggcugCGCGg -3'
miRNA:   3'- gGUa--GUGCGCUCg-GCugGGCGa----GCGC- -5'
26598 3' -59.6 NC_005357.1 + 25202 0.68 0.33763
Target:  5'- gCA-CGCGCGAccGCUGGCCCgGCUUGUu -3'
miRNA:   3'- gGUaGUGCGCU--CGGCUGGG-CGAGCGc -5'
26598 3' -59.6 NC_005357.1 + 23761 0.68 0.321971
Target:  5'- gCCGgcgcCAC-CGGGCCGAUgCGC-CGCGg -3'
miRNA:   3'- -GGUa---GUGcGCUCGGCUGgGCGaGCGC- -5'
26598 3' -59.6 NC_005357.1 + 6385 0.69 0.306861
Target:  5'- -aAUCAgGCGcaGGCCGGCCgGCccgguguagUCGCGg -3'
miRNA:   3'- ggUAGUgCGC--UCGGCUGGgCG---------AGCGC- -5'
26598 3' -59.6 NC_005357.1 + 31933 0.69 0.299512
Target:  5'- uUCGUCAa--GAGCaCGGCCCGUUCGgGc -3'
miRNA:   3'- -GGUAGUgcgCUCG-GCUGGGCGAGCgC- -5'
26598 3' -59.6 NC_005357.1 + 18556 0.69 0.299512
Target:  5'- uCgAUCACGUcGGUggaGGCCgCGCUCGCGg -3'
miRNA:   3'- -GgUAGUGCGcUCGg--CUGG-GCGAGCGC- -5'
26598 3' -59.6 NC_005357.1 + 8658 0.69 0.299512
Target:  5'- uUCAUCGCGCGgucGGCauugCGugCCGCgCGCa -3'
miRNA:   3'- -GGUAGUGCGC---UCG----GCugGGCGaGCGc -5'
26598 3' -59.6 NC_005357.1 + 865 0.69 0.2923
Target:  5'- aCAUCAUGCGAGCCGAgUUGaacaGCa -3'
miRNA:   3'- gGUAGUGCGCUCGGCUgGGCgag-CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.