Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26599 | 5' | -54.8 | NC_005357.1 | + | 216 | 0.66 | 0.674077 |
Target: 5'- aCGGCGAacugGCGCAccucGG-CAuuGGcGCGCUGg -3' miRNA: 3'- gGUCGCUa---CGCGU----UCaGU--UC-CGCGAC- -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 1724 | 0.66 | 0.628892 |
Target: 5'- gCCGGCGAggGCGUccAAGUCcucgcGGGUGUUa -3' miRNA: 3'- -GGUCGCUa-CGCG--UUCAGu----UCCGCGAc -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 3741 | 0.66 | 0.640211 |
Target: 5'- gCCGGUGGUGgGCAcGUCGGuGCcgccGCUGg -3' miRNA: 3'- -GGUCGCUACgCGUuCAGUUcCG----CGAC- -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 4026 | 0.73 | 0.258107 |
Target: 5'- aCCAGCGucaugccGCGCGGGUCGAG-CGCa- -3' miRNA: 3'- -GGUCGCua-----CGCGUUCAGUUCcGCGac -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 5283 | 0.69 | 0.485445 |
Target: 5'- uCCAGCGucgauUGCugcaugucugGCAGGUCGAGGcCGUa- -3' miRNA: 3'- -GGUCGCu----ACG----------CGUUCAGUUCC-GCGac -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 6342 | 0.69 | 0.454397 |
Target: 5'- cCCAGCcaaaGCGCccggcccgaAGGcCGGGGCGCUGg -3' miRNA: 3'- -GGUCGcua-CGCG---------UUCaGUUCCGCGAC- -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 6619 | 0.69 | 0.444288 |
Target: 5'- aCCAGCGG-GCGCGu-----GGCGCUGc -3' miRNA: 3'- -GGUCGCUaCGCGUucaguuCCGCGAC- -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 7132 | 0.66 | 0.651522 |
Target: 5'- cCCAGCGGU-UGCAua--AGGGCGCUc -3' miRNA: 3'- -GGUCGCUAcGCGUucagUUCCGCGAc -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 7796 | 0.69 | 0.47394 |
Target: 5'- -aGGCGAUGggcaugucccacuCGCugauauGGUCGAGGCGCg- -3' miRNA: 3'- ggUCGCUAC-------------GCGu-----UCAGUUCCGCGac -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 8192 | 0.66 | 0.628892 |
Target: 5'- gCCGGCGAUuucaucGCGCAcggccucguAGUC---GCGCUGg -3' miRNA: 3'- -GGUCGCUA------CGCGU---------UCAGuucCGCGAC- -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 8311 | 0.73 | 0.272033 |
Target: 5'- gCCAGCGGUGCGCGcugcUCGGGGaaaGUUGc -3' miRNA: 3'- -GGUCGCUACGCGUuc--AGUUCCg--CGAC- -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 9212 | 0.68 | 0.528333 |
Target: 5'- gCGGCGcgGCGCAcGUUcugcGGCGCg- -3' miRNA: 3'- gGUCGCuaCGCGUuCAGuu--CCGCGac -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 10720 | 0.67 | 0.606273 |
Target: 5'- cCCGcGCGcgGCGgGcuGGUCAGgcGGUGCUGc -3' miRNA: 3'- -GGU-CGCuaCGCgU--UCAGUU--CCGCGAC- -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 11422 | 0.73 | 0.286557 |
Target: 5'- gCGGCGAgccggcGUGCAGGUCGccgauaAGGCGCg- -3' miRNA: 3'- gGUCGCUa-----CGCGUUCAGU------UCCGCGac -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 11483 | 0.7 | 0.424456 |
Target: 5'- gCCAGCu-UGCGUAGcGUUuccccacuGGGGCGCUGa -3' miRNA: 3'- -GGUCGcuACGCGUU-CAG--------UUCCGCGAC- -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 12047 | 0.67 | 0.606273 |
Target: 5'- cCCAGCG-UGuCG-AAGUCGAuGGCGCc- -3' miRNA: 3'- -GGUCGCuAC-GCgUUCAGUU-CCGCGac -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 12502 | 0.66 | 0.640211 |
Target: 5'- aCAGUGGcguuuuucaUGaacaGCGcGUCGAGGUGCUGc -3' miRNA: 3'- gGUCGCU---------ACg---CGUuCAGUUCCGCGAC- -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 14159 | 0.66 | 0.651522 |
Target: 5'- cCCAGCGcgcggucaugGUGCGCAacauGGUgAGccuGGCGCa- -3' miRNA: 3'- -GGUCGC----------UACGCGU----UCAgUU---CCGCGac -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 16156 | 0.68 | 0.53928 |
Target: 5'- --cGCGAUGCGCGAGcCGaccaggccggcGGGUGCc- -3' miRNA: 3'- gguCGCUACGCGUUCaGU-----------UCCGCGac -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 18263 | 0.73 | 0.264996 |
Target: 5'- aCGcCGAagcGCGCAGccGUCGAGGCGCUGg -3' miRNA: 3'- gGUcGCUa--CGCGUU--CAGUUCCGCGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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