Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26599 | 5' | -54.8 | NC_005357.1 | + | 24313 | 0.66 | 0.640211 |
Target: 5'- gUCGGCGAgcaGcCGCGGGUC-AGGCGg-- -3' miRNA: 3'- -GGUCGCUa--C-GCGUUCAGuUCCGCgac -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 38582 | 0.68 | 0.53928 |
Target: 5'- gCGGCGAggUGCGCAA----AGuGCGCUGg -3' miRNA: 3'- gGUCGCU--ACGCGUUcaguUC-CGCGAC- -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 21691 | 0.67 | 0.606273 |
Target: 5'- gCCAGaaGGUGCGaCAGGUCGAGGU--UGa -3' miRNA: 3'- -GGUCg-CUACGC-GUUCAGUUCCGcgAC- -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 12047 | 0.67 | 0.606273 |
Target: 5'- cCCAGCG-UGuCG-AAGUCGAuGGCGCc- -3' miRNA: 3'- -GGUCGCuAC-GCgUUCAGUU-CCGCGac -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 36646 | 0.66 | 0.628892 |
Target: 5'- gCC-GCGAUG-GCGggacacgauGGUCAAGGCcCUGg -3' miRNA: 3'- -GGuCGCUACgCGU---------UCAGUUCCGcGAC- -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 1724 | 0.66 | 0.628892 |
Target: 5'- gCCGGCGAggGCGUccAAGUCcucgcGGGUGUUa -3' miRNA: 3'- -GGUCGCUa-CGCG--UUCAGu----UCCGCGAc -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 8192 | 0.66 | 0.628892 |
Target: 5'- gCCGGCGAUuucaucGCGCAcggccucguAGUC---GCGCUGg -3' miRNA: 3'- -GGUCGCUA------CGCGU---------UCAGuucCGCGAC- -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 3741 | 0.66 | 0.640211 |
Target: 5'- gCCGGUGGUGgGCAcGUCGGuGCcgccGCUGg -3' miRNA: 3'- -GGUCGCUACgCGUuCAGUUcCG----CGAC- -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 12502 | 0.66 | 0.640211 |
Target: 5'- aCAGUGGcguuuuucaUGaacaGCGcGUCGAGGUGCUGc -3' miRNA: 3'- gGUCGCU---------ACg---CGUuCAGUUCCGCGAC- -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 9212 | 0.68 | 0.528333 |
Target: 5'- gCGGCGcgGCGCAcGUUcugcGGCGCg- -3' miRNA: 3'- gGUCGCuaCGCGUuCAGuu--CCGCGac -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 39648 | 0.68 | 0.506695 |
Target: 5'- -gGGCGcaccUGCGCAAcGUCGAGGUGUc- -3' miRNA: 3'- ggUCGCu---ACGCGUU-CAGUUCCGCGac -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 30632 | 0.69 | 0.464629 |
Target: 5'- aCCAGCcg-GCGCGAaUgAGGGCGCa- -3' miRNA: 3'- -GGUCGcuaCGCGUUcAgUUCCGCGac -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 4026 | 0.73 | 0.258107 |
Target: 5'- aCCAGCGucaugccGCGCGGGUCGAG-CGCa- -3' miRNA: 3'- -GGUCGCua-----CGCGUUCAGUUCcGCGac -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 27439 | 0.73 | 0.27922 |
Target: 5'- cCCGGCGGc-CGCAGGcCcuGGCGCUGg -3' miRNA: 3'- -GGUCGCUacGCGUUCaGuuCCGCGAC- -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 11422 | 0.73 | 0.286557 |
Target: 5'- gCGGCGAgccggcGUGCAGGUCGccgauaAGGCGCg- -3' miRNA: 3'- gGUCGCUa-----CGCGUUCAGU------UCCGCGac -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 28682 | 0.72 | 0.304007 |
Target: 5'- gCCAGCGcgGCGCGccacgucguucacaaGGUCGAugcugucGGCGCa- -3' miRNA: 3'- -GGUCGCuaCGCGU---------------UCAGUU-------CCGCGac -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 26193 | 0.72 | 0.308691 |
Target: 5'- -uGGCGAUggcuucgGUGUAGGUCGAGGCGUUu -3' miRNA: 3'- ggUCGCUA-------CGCGUUCAGUUCCGCGAc -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 28755 | 0.71 | 0.36828 |
Target: 5'- uCCAGCGcgGUGCGcuUCucGGCGCg- -3' miRNA: 3'- -GGUCGCuaCGCGUucAGuuCCGCGac -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 24182 | 0.7 | 0.405162 |
Target: 5'- uUCGGCGuguccaugaGCGCGAG-CAcguAGGCGCUGc -3' miRNA: 3'- -GGUCGCua-------CGCGUUCaGU---UCCGCGAC- -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 38817 | 0.69 | 0.45338 |
Target: 5'- gCCAGCGAagcaaaaUGCGCG-GUCAAGGUu--- -3' miRNA: 3'- -GGUCGCU-------ACGCGUuCAGUUCCGcgac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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