miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2660 5' -59.2 NC_001491.2 + 25056 0.78 0.220588
Target:  5'- -cUGCgCGCUCG-CUCGCCGCCGCa- -3'
miRNA:   3'- ccAUGgGCGAGCuGAGUGGCGGCGcg -5'
2660 5' -59.2 NC_001491.2 + 27262 0.68 0.693384
Target:  5'- cGUcCCCGCUCcgGACUCcUCGCCGuCGa -3'
miRNA:   3'- cCAuGGGCGAG--CUGAGuGGCGGC-GCg -5'
2660 5' -59.2 NC_001491.2 + 27933 0.74 0.385856
Target:  5'- cGUACaCCuaUCGACUCACCGgCgaGCGCu -3'
miRNA:   3'- cCAUG-GGcgAGCUGAGUGGCgG--CGCG- -5'
2660 5' -59.2 NC_001491.2 + 31916 0.69 0.634437
Target:  5'- cGGcACCCaGCcCGGCUCcggGCuCGCCGCGa -3'
miRNA:   3'- -CCaUGGG-CGaGCUGAG---UG-GCGGCGCg -5'
2660 5' -59.2 NC_001491.2 + 32283 0.67 0.759854
Target:  5'- --cGCCCGCggcACUCGCagaaCGCCGCGa -3'
miRNA:   3'- ccaUGGGCGagcUGAGUG----GCGGCGCg -5'
2660 5' -59.2 NC_001491.2 + 32419 0.66 0.786928
Target:  5'- --cACCCGCUcCGGCUCcaGCUuCgGCGCc -3'
miRNA:   3'- ccaUGGGCGA-GCUGAG--UGGcGgCGCG- -5'
2660 5' -59.2 NC_001491.2 + 32557 0.68 0.703088
Target:  5'- --cGCCCGCggggaUGGCUUcuCCGCCGgGCc -3'
miRNA:   3'- ccaUGGGCGa----GCUGAGu-GGCGGCgCG- -5'
2660 5' -59.2 NC_001491.2 + 33361 0.72 0.444728
Target:  5'- gGGgagGCCgGaCUC-ACUCGCCGCCGUGg -3'
miRNA:   3'- -CCa--UGGgC-GAGcUGAGUGGCGGCGCg -5'
2660 5' -59.2 NC_001491.2 + 33391 0.67 0.731832
Target:  5'- cGGcUACCCgGCccaGGC-CGCCGCUGcCGCg -3'
miRNA:   3'- -CC-AUGGG-CGag-CUGaGUGGCGGC-GCG- -5'
2660 5' -59.2 NC_001491.2 + 35468 0.69 0.644309
Target:  5'- --cACCCGCguuccccUGGCUCcgagggaguACCGCCaGCGCg -3'
miRNA:   3'- ccaUGGGCGa------GCUGAG---------UGGCGG-CGCG- -5'
2660 5' -59.2 NC_001491.2 + 35650 0.67 0.741264
Target:  5'- uGUACCuCGCcugCGGC-CGgCGCgGCGCu -3'
miRNA:   3'- cCAUGG-GCGa--GCUGaGUgGCGgCGCG- -5'
2660 5' -59.2 NC_001491.2 + 43416 0.67 0.750607
Target:  5'- --cGCaaGCUCGACgCGCCGCaggaaGCGUc -3'
miRNA:   3'- ccaUGggCGAGCUGaGUGGCGg----CGCG- -5'
2660 5' -59.2 NC_001491.2 + 45984 0.67 0.741264
Target:  5'- cGGcgcCCCGCUgGGaUUAUCGCaCGCGCu -3'
miRNA:   3'- -CCau-GGGCGAgCUgAGUGGCG-GCGCG- -5'
2660 5' -59.2 NC_001491.2 + 48700 0.72 0.471455
Target:  5'- cGUG-CUGUUCGACUCACCGCUacaGCGa -3'
miRNA:   3'- cCAUgGGCGAGCUGAGUGGCGG---CGCg -5'
2660 5' -59.2 NC_001491.2 + 55006 0.66 0.829358
Target:  5'- cGUGaaCGCUgCG-CUCGCCGC-GCGCc -3'
miRNA:   3'- cCAUggGCGA-GCuGAGUGGCGgCGCG- -5'
2660 5' -59.2 NC_001491.2 + 60710 0.66 0.821177
Target:  5'- gGGUcCgCCGCaauucUCGuACUCACuCGUgGCGCu -3'
miRNA:   3'- -CCAuG-GGCG-----AGC-UGAGUG-GCGgCGCG- -5'
2660 5' -59.2 NC_001491.2 + 60934 0.68 0.680699
Target:  5'- cGGUGCCUGuCUaguaucucgcCGACUgcagcuugggccucCACuCGCUGCGCg -3'
miRNA:   3'- -CCAUGGGC-GA----------GCUGA--------------GUG-GCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 69405 0.66 0.811994
Target:  5'- --cAUCCGCgCGGCUCugUacggcguGCUGCGCc -3'
miRNA:   3'- ccaUGGGCGaGCUGAGugG-------CGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 72489 0.67 0.778022
Target:  5'- uGUAcCCCGC-CGAUUgCACCGUCuggguguaGCGCu -3'
miRNA:   3'- cCAU-GGGCGaGCUGA-GUGGCGG--------CGCG- -5'
2660 5' -59.2 NC_001491.2 + 75977 0.68 0.703088
Target:  5'- --aGCCC--UCG-CUC-CCGCCGCGCc -3'
miRNA:   3'- ccaUGGGcgAGCuGAGuGGCGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.