miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2660 5' -59.2 NC_001491.2 + 1634 0.75 0.339665
Target:  5'- cGGUugGCCgCGCggUGGCUCugCGCgGCGCc -3'
miRNA:   3'- -CCA--UGG-GCGa-GCUGAGugGCGgCGCG- -5'
2660 5' -59.2 NC_001491.2 + 3184 0.71 0.498973
Target:  5'- cGGaGCCgGagaagGGCUCGCCGCCGgGCg -3'
miRNA:   3'- -CCaUGGgCgag--CUGAGUGGCGGCgCG- -5'
2660 5' -59.2 NC_001491.2 + 3342 0.67 0.768994
Target:  5'- cGGgcCCC-CUCGGCguuguagcgCACCaGCgGCGCc -3'
miRNA:   3'- -CCauGGGcGAGCUGa--------GUGG-CGgCGCG- -5'
2660 5' -59.2 NC_001491.2 + 3470 0.67 0.776226
Target:  5'- --gGCCCGCUCGACcaggucccugaguUCguagagggagaggGCCGCCGUc- -3'
miRNA:   3'- ccaUGGGCGAGCUG-------------AG-------------UGGCGGCGcg -5'
2660 5' -59.2 NC_001491.2 + 3709 0.68 0.72232
Target:  5'- uGGUcCCCGgagCGGC-CGCgGCCGCGg -3'
miRNA:   3'- -CCAuGGGCga-GCUGaGUGgCGGCGCg -5'
2660 5' -59.2 NC_001491.2 + 4589 0.67 0.778022
Target:  5'- gGGUugGCCCGCUUGcgcuucgacGCUC-CCGCCagaGCc -3'
miRNA:   3'- -CCA--UGGGCGAGC---------UGAGuGGCGGcg-CG- -5'
2660 5' -59.2 NC_001491.2 + 5206 0.66 0.786928
Target:  5'- aGGgcgACCgGgUCGGCcgcgucccCACCGCCGgGUg -3'
miRNA:   3'- -CCa--UGGgCgAGCUGa-------GUGGCGGCgCG- -5'
2660 5' -59.2 NC_001491.2 + 5338 0.66 0.821177
Target:  5'- gGGgacGCCgGCUgGGCggcaGCCGCCGgGg -3'
miRNA:   3'- -CCa--UGGgCGAgCUGag--UGGCGGCgCg -5'
2660 5' -59.2 NC_001491.2 + 8580 0.67 0.741264
Target:  5'- cGUGCCCGCgaGGCUCcCCGgCG-GCu -3'
miRNA:   3'- cCAUGGGCGagCUGAGuGGCgGCgCG- -5'
2660 5' -59.2 NC_001491.2 + 8878 0.66 0.804343
Target:  5'- -cUGCCCGagcaGAgCUUcCCGCUGCGCg -3'
miRNA:   3'- ccAUGGGCgag-CU-GAGuGGCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 10032 0.75 0.325186
Target:  5'- cGG-ACaCCGCggcgcacgCGGuCUCGCUGCCGCGCu -3'
miRNA:   3'- -CCaUG-GGCGa-------GCU-GAGUGGCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 10138 0.67 0.750607
Target:  5'- cGGgccGCCCGCggaGGcCUgGCCGCgCGUGUa -3'
miRNA:   3'- -CCa--UGGGCGag-CU-GAgUGGCG-GCGCG- -5'
2660 5' -59.2 NC_001491.2 + 10214 0.73 0.393134
Target:  5'- -aUGCCCGUcuuccacUCGGCggacccgCugCGCCGCGCc -3'
miRNA:   3'- ccAUGGGCG-------AGCUGa------GugGCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 10259 0.68 0.693384
Target:  5'- cGGUACCuCGUg-GAuCUCGgCGCgGCGCc -3'
miRNA:   3'- -CCAUGG-GCGagCU-GAGUgGCGgCGCG- -5'
2660 5' -59.2 NC_001491.2 + 12066 0.66 0.795704
Target:  5'- aGGUGCUuaCGCUCGccuCUCGgCGCCuccuCGCc -3'
miRNA:   3'- -CCAUGG--GCGAGCu--GAGUgGCGGc---GCG- -5'
2660 5' -59.2 NC_001491.2 + 12592 0.66 0.786928
Target:  5'- ---cCCCcCUcCGACggcCGCCGCCGCGg -3'
miRNA:   3'- ccauGGGcGA-GCUGa--GUGGCGGCGCg -5'
2660 5' -59.2 NC_001491.2 + 16199 0.68 0.683632
Target:  5'- cGUcUCCGUUCGGC-CGCCGauGCGCc -3'
miRNA:   3'- cCAuGGGCGAGCUGaGUGGCggCGCG- -5'
2660 5' -59.2 NC_001491.2 + 24607 0.69 0.654172
Target:  5'- cGGgaaauuCCCGCcccggggCGGC-CGCUGCCGCGg -3'
miRNA:   3'- -CCau----GGGCGa------GCUGaGUGGCGGCGCg -5'
2660 5' -59.2 NC_001491.2 + 24699 0.77 0.241732
Target:  5'- --cGCCCGCUCGguccacgGC-CGCCGCCGCGa -3'
miRNA:   3'- ccaUGGGCGAGC-------UGaGUGGCGGCGCg -5'
2660 5' -59.2 NC_001491.2 + 24742 0.69 0.614694
Target:  5'- cGGggACCCGCg-GGCgccCGCCGCC-CGCc -3'
miRNA:   3'- -CCa-UGGGCGagCUGa--GUGGCGGcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.