miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2660 5' -59.2 NC_001491.2 + 89204 1.13 0.000888
Target:  5'- uGGUACCCGCUCGACUCACCGCCGCGCa -3'
miRNA:   3'- -CCAUGGGCGAGCUGAGUGGCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 25056 0.78 0.220588
Target:  5'- -cUGCgCGCUCG-CUCGCCGCCGCa- -3'
miRNA:   3'- ccAUGgGCGAGCuGAGUGGCGGCGcg -5'
2660 5' -59.2 NC_001491.2 + 24699 0.77 0.241732
Target:  5'- --cGCCCGCUCGguccacgGC-CGCCGCCGCGa -3'
miRNA:   3'- ccaUGGGCGAGC-------UGaGUGGCGGCGCg -5'
2660 5' -59.2 NC_001491.2 + 10032 0.75 0.325186
Target:  5'- cGG-ACaCCGCggcgcacgCGGuCUCGCUGCCGCGCu -3'
miRNA:   3'- -CCaUG-GGCGa-------GCU-GAGUGGCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 1634 0.75 0.339665
Target:  5'- cGGUugGCCgCGCggUGGCUCugCGCgGCGCc -3'
miRNA:   3'- -CCA--UGG-GCGa-GCUGAGugGCGgCGCG- -5'
2660 5' -59.2 NC_001491.2 + 136910 0.74 0.347079
Target:  5'- --aGCCaCGC--GACUCACgGCCGCGCa -3'
miRNA:   3'- ccaUGG-GCGagCUGAGUGgCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 27933 0.74 0.385856
Target:  5'- cGUACaCCuaUCGACUCACCGgCgaGCGCu -3'
miRNA:   3'- cCAUG-GGcgAGCUGAGUGGCgG--CGCG- -5'
2660 5' -59.2 NC_001491.2 + 10214 0.73 0.393134
Target:  5'- -aUGCCCGUcuuccacUCGGCggacccgCugCGCCGCGCc -3'
miRNA:   3'- ccAUGGGCG-------AGCUGa------GugGCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 33361 0.72 0.444728
Target:  5'- gGGgagGCCgGaCUC-ACUCGCCGCCGUGg -3'
miRNA:   3'- -CCa--UGGgC-GAGcUGAGUGGCGGCGCg -5'
2660 5' -59.2 NC_001491.2 + 48700 0.72 0.471455
Target:  5'- cGUG-CUGUUCGACUCACCGCUacaGCGa -3'
miRNA:   3'- cCAUgGGCGAGCUGAGUGGCGG---CGCg -5'
2660 5' -59.2 NC_001491.2 + 3184 0.71 0.498973
Target:  5'- cGGaGCCgGagaagGGCUCGCCGCCGgGCg -3'
miRNA:   3'- -CCaUGGgCgag--CUGAGUGGCGGCgCG- -5'
2660 5' -59.2 NC_001491.2 + 24742 0.69 0.614694
Target:  5'- cGGggACCCGCg-GGCgccCGCCGCC-CGCc -3'
miRNA:   3'- -CCa-UGGGCGagCUGa--GUGGCGGcGCG- -5'
2660 5' -59.2 NC_001491.2 + 31916 0.69 0.634437
Target:  5'- cGGcACCCaGCcCGGCUCcggGCuCGCCGCGa -3'
miRNA:   3'- -CCaUGGG-CGaGCUGAG---UG-GCGGCGCg -5'
2660 5' -59.2 NC_001491.2 + 97260 0.69 0.634437
Target:  5'- --aGCCUGCUUGGCaUC-UUGCUGCGCg -3'
miRNA:   3'- ccaUGGGCGAGCUG-AGuGGCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 117754 0.69 0.642335
Target:  5'- uGGUggcAUCCGCUCGggggaguACUCugacaagGCCGCUGCGg -3'
miRNA:   3'- -CCA---UGGGCGAGC-------UGAG-------UGGCGGCGCg -5'
2660 5' -59.2 NC_001491.2 + 35468 0.69 0.644309
Target:  5'- --cACCCGCguuccccUGGCUCcgagggaguACCGCCaGCGCg -3'
miRNA:   3'- ccaUGGGCGa------GCUGAG---------UGGCGG-CGCG- -5'
2660 5' -59.2 NC_001491.2 + 24607 0.69 0.654172
Target:  5'- cGGgaaauuCCCGCcccggggCGGC-CGCUGCCGCGg -3'
miRNA:   3'- -CCau----GGGCGa------GCUGaGUGGCGGCGCg -5'
2660 5' -59.2 NC_001491.2 + 90103 0.69 0.664018
Target:  5'- --gAgCCGCUU--C-CGCCGCCGCGCg -3'
miRNA:   3'- ccaUgGGCGAGcuGaGUGGCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 60934 0.68 0.680699
Target:  5'- cGGUGCCUGuCUaguaucucgcCGACUgcagcuugggccucCACuCGCUGCGCg -3'
miRNA:   3'- -CCAUGGGC-GA----------GCUGA--------------GUG-GCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 16199 0.68 0.683632
Target:  5'- cGUcUCCGUUCGGC-CGCCGauGCGCc -3'
miRNA:   3'- cCAuGGGCGAGCUGaGUGGCggCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.