miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26601 3' -53.7 NC_005357.1 + 35822 1.15 0.000419
Target:  5'- cGCGCCCGCUGGUCAUCGACAAAGACCg -3'
miRNA:   3'- -CGCGGGCGACCAGUAGCUGUUUCUGG- -5'
26601 3' -53.7 NC_005357.1 + 33563 0.78 0.186932
Target:  5'- cGCGCCCGCU--UCGUggCGACcGAGGCCa -3'
miRNA:   3'- -CGCGGGCGAccAGUA--GCUGuUUCUGG- -5'
26601 3' -53.7 NC_005357.1 + 14204 0.78 0.186932
Target:  5'- cCGaCCCGCgcgUGGUCGUCGGCGu-GGCCg -3'
miRNA:   3'- cGC-GGGCG---ACCAGUAGCUGUuuCUGG- -5'
26601 3' -53.7 NC_005357.1 + 11561 0.77 0.197465
Target:  5'- cUGCCCGCcGGUCAUCGAagcCAugccgcccAGGGCCg -3'
miRNA:   3'- cGCGGGCGaCCAGUAGCU---GU--------UUCUGG- -5'
26601 3' -53.7 NC_005357.1 + 34634 0.77 0.202371
Target:  5'- aGCGCCUGCUGGg---CGGCGAAGgguggacGCCg -3'
miRNA:   3'- -CGCGGGCGACCaguaGCUGUUUC-------UGG- -5'
26601 3' -53.7 NC_005357.1 + 18593 0.75 0.251435
Target:  5'- cUGCCUGCUGGUCAcgcCGGugccgcacuuCAAAGGCCa -3'
miRNA:   3'- cGCGGGCGACCAGUa--GCU----------GUUUCUGG- -5'
26601 3' -53.7 NC_005357.1 + 15709 0.75 0.27909
Target:  5'- gGCGUCCGcCUGGgCAUCGAacuggcgcGAGGCCa -3'
miRNA:   3'- -CGCGGGC-GACCaGUAGCUgu------UUCUGG- -5'
26601 3' -53.7 NC_005357.1 + 34715 0.75 0.286371
Target:  5'- aGCGUgCGCUGcaguUCAUCGGCAAGccGGCCg -3'
miRNA:   3'- -CGCGgGCGACc---AGUAGCUGUUU--CUGG- -5'
26601 3' -53.7 NC_005357.1 + 8392 0.75 0.286371
Target:  5'- cGCGCUgGCUGcGUagccaGUCGGCcAGGGCCg -3'
miRNA:   3'- -CGCGGgCGAC-CAg----UAGCUGuUUCUGG- -5'
26601 3' -53.7 NC_005357.1 + 37500 0.75 0.286371
Target:  5'- gGCGCCCgagggcaagaaGCUGGUCGUCG-Cc--GACCu -3'
miRNA:   3'- -CGCGGG-----------CGACCAGUAGCuGuuuCUGG- -5'
26601 3' -53.7 NC_005357.1 + 35272 0.74 0.301381
Target:  5'- aGCGCCCGgccCUGGUCAUCc----AGGCCg -3'
miRNA:   3'- -CGCGGGC---GACCAGUAGcuguuUCUGG- -5'
26601 3' -53.7 NC_005357.1 + 25760 0.72 0.394622
Target:  5'- gGCGCgCUGCUGGgCggCGGCAAcgauGGCCg -3'
miRNA:   3'- -CGCG-GGCGACCaGuaGCUGUUu---CUGG- -5'
26601 3' -53.7 NC_005357.1 + 27706 0.72 0.412511
Target:  5'- cGCGCCggcagcggcucgcCGCcGGUCAUgGACuugauGAGGCCc -3'
miRNA:   3'- -CGCGG-------------GCGaCCAGUAgCUGu----UUCUGG- -5'
26601 3' -53.7 NC_005357.1 + 15118 0.72 0.413467
Target:  5'- cGCGCCUGUgGG-CGUCGugGGAaGCCu -3'
miRNA:   3'- -CGCGGGCGaCCaGUAGCugUUUcUGG- -5'
26601 3' -53.7 NC_005357.1 + 7132 0.72 0.413467
Target:  5'- aCGUCCGCgaaGUCGUCGGCugcGGCCu -3'
miRNA:   3'- cGCGGGCGac-CAGUAGCUGuuuCUGG- -5'
26601 3' -53.7 NC_005357.1 + 11809 0.72 0.413467
Target:  5'- cGCGCCgGCUGGUCGcaaGAac-AGAUCg -3'
miRNA:   3'- -CGCGGgCGACCAGUag-CUguuUCUGG- -5'
26601 3' -53.7 NC_005357.1 + 34591 0.71 0.432856
Target:  5'- cGCGUgCGcCUGGUCAUCGuGCAGccgcgccucGACCa -3'
miRNA:   3'- -CGCGgGC-GACCAGUAGC-UGUUu--------CUGG- -5'
26601 3' -53.7 NC_005357.1 + 33576 0.71 0.442747
Target:  5'- cCGCaCCGUccUGGgcuaCGUCGGCGAGGACg -3'
miRNA:   3'- cGCG-GGCG--ACCa---GUAGCUGUUUCUGg -5'
26601 3' -53.7 NC_005357.1 + 37560 0.71 0.473161
Target:  5'- uCGCCgCGCUGGgCAaCGACcu-GACCg -3'
miRNA:   3'- cGCGG-GCGACCaGUaGCUGuuuCUGG- -5'
26601 3' -53.7 NC_005357.1 + 23418 0.71 0.473161
Target:  5'- -aGCgCGCcGGUCAgugCGACGccGGCCg -3'
miRNA:   3'- cgCGgGCGaCCAGUa--GCUGUuuCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.