miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26601 3' -53.7 NC_005357.1 + 860 0.67 0.681819
Target:  5'- -gGCCUGUaUGGcUUucguuucccuAUCGACGAGGGCCg -3'
miRNA:   3'- cgCGGGCG-ACC-AG----------UAGCUGUUUCUGG- -5'
26601 3' -53.7 NC_005357.1 + 2017 0.69 0.580986
Target:  5'- gGCGCUCGCUGGcgaaGUCG-CGcAGGCg -3'
miRNA:   3'- -CGCGGGCGACCag--UAGCuGUuUCUGg -5'
26601 3' -53.7 NC_005357.1 + 2799 0.66 0.736612
Target:  5'- uGCGCCCaCU--UCGUCGAUucgucGGGCCa -3'
miRNA:   3'- -CGCGGGcGAccAGUAGCUGuu---UCUGG- -5'
26601 3' -53.7 NC_005357.1 + 4953 0.69 0.547818
Target:  5'- aCGUCUGCgaGGUUAUCGACA---ACCg -3'
miRNA:   3'- cGCGGGCGa-CCAGUAGCUGUuucUGG- -5'
26601 3' -53.7 NC_005357.1 + 4970 0.68 0.648254
Target:  5'- uCGCgCUGCUGGUCAguuccaGACGuuGGCg -3'
miRNA:   3'- cGCG-GGCGACCAGUag----CUGUuuCUGg -5'
26601 3' -53.7 NC_005357.1 + 5056 0.68 0.647132
Target:  5'- gGCGaCCGCUGcauugauGUUGUCGGCAuugccGACCg -3'
miRNA:   3'- -CGCgGGCGAC-------CAGUAGCUGUuu---CUGG- -5'
26601 3' -53.7 NC_005357.1 + 5184 0.69 0.569874
Target:  5'- cCGCCUGCacGUCGUCGAUAuu-GCCg -3'
miRNA:   3'- cGCGGGCGacCAGUAGCUGUuucUGG- -5'
26601 3' -53.7 NC_005357.1 + 5238 0.66 0.757847
Target:  5'- aCGCCacgguguugaCGUUGG-CGUUGGCAccGGCCa -3'
miRNA:   3'- cGCGG----------GCGACCaGUAGCUGUuuCUGG- -5'
26601 3' -53.7 NC_005357.1 + 5555 0.66 0.725823
Target:  5'- uCGCCCGCcacGG-UAUCGACGGc-GCCa -3'
miRNA:   3'- cGCGGGCGa--CCaGUAGCUGUUucUGG- -5'
26601 3' -53.7 NC_005357.1 + 6529 0.69 0.592141
Target:  5'- uGCGCCCacaguucgauGCUGG-CGUUGACGuAGcaGCCc -3'
miRNA:   3'- -CGCGGG----------CGACCaGUAGCUGUuUC--UGG- -5'
26601 3' -53.7 NC_005357.1 + 7132 0.72 0.413467
Target:  5'- aCGUCCGCgaaGUCGUCGGCugcGGCCu -3'
miRNA:   3'- cGCGGGCGac-CAGUAGCUGuuuCUGG- -5'
26601 3' -53.7 NC_005357.1 + 8195 0.69 0.547818
Target:  5'- cUGCCCGUUcGUCAgCGACAuggcGGCCa -3'
miRNA:   3'- cGCGGGCGAcCAGUaGCUGUuu--CUGG- -5'
26601 3' -53.7 NC_005357.1 + 8392 0.75 0.286371
Target:  5'- cGCGCUgGCUGcGUagccaGUCGGCcAGGGCCg -3'
miRNA:   3'- -CGCGGgCGAC-CAg----UAGCUGuUUCUGG- -5'
26601 3' -53.7 NC_005357.1 + 11175 0.7 0.536889
Target:  5'- uGCGUgCGCUGGUCGgcCGugGugauGGugCg -3'
miRNA:   3'- -CGCGgGCGACCAGUa-GCugUu---UCugG- -5'
26601 3' -53.7 NC_005357.1 + 11561 0.77 0.197465
Target:  5'- cUGCCCGCcGGUCAUCGAagcCAugccgcccAGGGCCg -3'
miRNA:   3'- cGCGGGCGaCCAGUAGCU---GU--------UUCUGG- -5'
26601 3' -53.7 NC_005357.1 + 11624 0.66 0.768269
Target:  5'- uGCGCaaGCgUGGUCAUCGGgGAAa--- -3'
miRNA:   3'- -CGCGggCG-ACCAGUAGCUgUUUcugg -5'
26601 3' -53.7 NC_005357.1 + 11809 0.72 0.413467
Target:  5'- cGCGCCgGCUGGUCGcaaGAac-AGAUCg -3'
miRNA:   3'- -CGCGGgCGACCAGUag-CUguuUCUGG- -5'
26601 3' -53.7 NC_005357.1 + 12768 0.68 0.648254
Target:  5'- cGCGCCCuGCUGGgCAaCGGCu---ACCu -3'
miRNA:   3'- -CGCGGG-CGACCaGUaGCUGuuucUGG- -5'
26601 3' -53.7 NC_005357.1 + 13231 0.69 0.558816
Target:  5'- cGCGUCCGaccugccGGUCAUC-ACcGAGGCCc -3'
miRNA:   3'- -CGCGGGCga-----CCAGUAGcUGuUUCUGG- -5'
26601 3' -53.7 NC_005357.1 + 13576 0.67 0.670665
Target:  5'- gGCGCggCGCUGGgacagCuUCGGCAAGuccGGCCg -3'
miRNA:   3'- -CGCGg-GCGACCa----GuAGCUGUUU---CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.