miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26602 3' -51.7 NC_005357.1 + 35920 0.96 0.012774
Target:  5'- gCGCAGGac-ACAACUACGGCAAGCGCg -3'
miRNA:   3'- -GCGUCCguuUGUUGAUGCCGUUCGCG- -5'
26602 3' -51.7 NC_005357.1 + 41255 0.82 0.126014
Target:  5'- gGCAGcGCGAuACGGCUguccuucaccaucgACGGCGAGCGCa -3'
miRNA:   3'- gCGUC-CGUU-UGUUGA--------------UGCCGUUCGCG- -5'
26602 3' -51.7 NC_005357.1 + 9734 0.81 0.134799
Target:  5'- cCGCGGGCGAACuGCUcGUGGUggGCGCg -3'
miRNA:   3'- -GCGUCCGUUUGuUGA-UGCCGuuCGCG- -5'
26602 3' -51.7 NC_005357.1 + 14612 0.81 0.142894
Target:  5'- cCGCGGGCAgcgcgcgcgagGACGuGCUGCGGCugcgcGGCGCg -3'
miRNA:   3'- -GCGUCCGU-----------UUGU-UGAUGCCGu----UCGCG- -5'
26602 3' -51.7 NC_005357.1 + 2361 0.8 0.15587
Target:  5'- uGCuGGGCAAACGGCaACGGUucgAGGCGCa -3'
miRNA:   3'- gCG-UCCGUUUGUUGaUGCCG---UUCGCG- -5'
26602 3' -51.7 NC_005357.1 + 14546 0.8 0.160427
Target:  5'- uGCuGGGCGAGCAcGCcaagAUGGCGAGCGCg -3'
miRNA:   3'- gCG-UCCGUUUGU-UGa---UGCCGUUCGCG- -5'
26602 3' -51.7 NC_005357.1 + 26951 0.79 0.174828
Target:  5'- cCGguGGCGAuGCAACUggACGGCAgcuucggccaagGGCGCg -3'
miRNA:   3'- -GCguCCGUU-UGUUGA--UGCCGU------------UCGCG- -5'
26602 3' -51.7 NC_005357.1 + 29234 0.79 0.179878
Target:  5'- uGCAGGCGuACAACgcCGGCcaaGGGCGCc -3'
miRNA:   3'- gCGUCCGUuUGUUGauGCCG---UUCGCG- -5'
26602 3' -51.7 NC_005357.1 + 25603 0.77 0.251148
Target:  5'- -cCAGGCAGugGCAACcACGGC-GGCGCg -3'
miRNA:   3'- gcGUCCGUU--UGUUGaUGCCGuUCGCG- -5'
26602 3' -51.7 NC_005357.1 + 34911 0.77 0.258036
Target:  5'- gCGCAcGGUAGACAACgccaccuCGGCAaccugcugGGCGCg -3'
miRNA:   3'- -GCGU-CCGUUUGUUGau-----GCCGU--------UCGCG- -5'
26602 3' -51.7 NC_005357.1 + 13440 0.77 0.258036
Target:  5'- gGCAGGCccgcCAGCUugGCGGCcucGGGCGCg -3'
miRNA:   3'- gCGUCCGuuu-GUUGA--UGCCG---UUCGCG- -5'
26602 3' -51.7 NC_005357.1 + 17958 0.76 0.286375
Target:  5'- gCGCAGGCAAGCAGCaggucguCGGCGucaaugucgccgaGGcCGCg -3'
miRNA:   3'- -GCGUCCGUUUGUUGau-----GCCGU-------------UC-GCG- -5'
26602 3' -51.7 NC_005357.1 + 39833 0.75 0.31061
Target:  5'- uCGUuccGGUu-GCAACaggGCGGCAAGCGCg -3'
miRNA:   3'- -GCGu--CCGuuUGUUGa--UGCCGUUCGCG- -5'
26602 3' -51.7 NC_005357.1 + 39956 0.74 0.370946
Target:  5'- gGCAGGCuugguuccuGGACAAa---GGCGAGCGCc -3'
miRNA:   3'- gCGUCCG---------UUUGUUgaugCCGUUCGCG- -5'
26602 3' -51.7 NC_005357.1 + 17748 0.74 0.370946
Target:  5'- aGCcuGGGCGugGACGugGCccGCGGCGGGCGCg -3'
miRNA:   3'- gCG--UCCGU--UUGU--UGa-UGCCGUUCGCG- -5'
26602 3' -51.7 NC_005357.1 + 10858 0.73 0.399144
Target:  5'- aGCAGGCccuGCGugGCUuCGGUcGGCGCg -3'
miRNA:   3'- gCGUCCGuu-UGU--UGAuGCCGuUCGCG- -5'
26602 3' -51.7 NC_005357.1 + 28846 0.73 0.399144
Target:  5'- -cCAGGUGAGCG---AUGGCGAGCGCg -3'
miRNA:   3'- gcGUCCGUUUGUugaUGCCGUUCGCG- -5'
26602 3' -51.7 NC_005357.1 + 13627 0.73 0.408843
Target:  5'- gCGCuGGCugcucaagaucGGCAACcAgGGCAAGCGCg -3'
miRNA:   3'- -GCGuCCGu----------UUGUUGaUgCCGUUCGCG- -5'
26602 3' -51.7 NC_005357.1 + 35670 0.73 0.423664
Target:  5'- gGCGGGCAAACuaaagaccuuuccGCUauugagcGCGGCGgcccAGCGCa -3'
miRNA:   3'- gCGUCCGUUUGu------------UGA-------UGCCGU----UCGCG- -5'
26602 3' -51.7 NC_005357.1 + 8881 0.73 0.425665
Target:  5'- aGCGGGCGcgGGCAucauugugaauggcGCUAuCGGC-GGCGCg -3'
miRNA:   3'- gCGUCCGU--UUGU--------------UGAU-GCCGuUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.