miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26602 3' -51.7 NC_005357.1 + 28077 0.71 0.546683
Target:  5'- aGCGGGCAggUGGCcGCGGCGu-CGUa -3'
miRNA:   3'- gCGUCCGUuuGUUGaUGCCGUucGCG- -5'
26602 3' -51.7 NC_005357.1 + 23656 0.72 0.459458
Target:  5'- gGCGGGC-AGCAACUGCacCAGGCGa -3'
miRNA:   3'- gCGUCCGuUUGUUGAUGccGUUCGCg -5'
26602 3' -51.7 NC_005357.1 + 7486 0.72 0.469979
Target:  5'- gCGguGGUAuaggccccuuGCAACUgGCGGCGcGCGCu -3'
miRNA:   3'- -GCguCCGUu---------UGUUGA-UGCCGUuCGCG- -5'
26602 3' -51.7 NC_005357.1 + 2373 0.72 0.473159
Target:  5'- uGCAcguGGCAGACGcccgcguGCguacccuugucaggGCGGCAAGCGUa -3'
miRNA:   3'- gCGU---CCGUUUGU-------UGa-------------UGCCGUUCGCG- -5'
26602 3' -51.7 NC_005357.1 + 186 0.72 0.477415
Target:  5'- uCGCuGGGCAccgucacgcugccgGGCGAC-ACGGCGaacuGGCGCa -3'
miRNA:   3'- -GCG-UCCGU--------------UUGUUGaUGCCGU----UCGCG- -5'
26602 3' -51.7 NC_005357.1 + 22888 0.72 0.491378
Target:  5'- gCGCGGuuGAACGACUGCuGCGAGUcgaGCa -3'
miRNA:   3'- -GCGUCcgUUUGUUGAUGcCGUUCG---CG- -5'
26602 3' -51.7 NC_005357.1 + 24312 0.71 0.502245
Target:  5'- gGUcGGCGAGCAGCcGCGGguCAGGCGg -3'
miRNA:   3'- gCGuCCGUUUGUUGaUGCC--GUUCGCg -5'
26602 3' -51.7 NC_005357.1 + 37268 0.71 0.513216
Target:  5'- uCGCcaaGGGCGugAGCAGCgACGGCcgccuGCGCg -3'
miRNA:   3'- -GCG---UCCGU--UUGUUGaUGCCGuu---CGCG- -5'
26602 3' -51.7 NC_005357.1 + 37073 0.71 0.535443
Target:  5'- gCGCGGuGCAGGCGGCcACG-C-AGCGCg -3'
miRNA:   3'- -GCGUC-CGUUUGUUGaUGCcGuUCGCG- -5'
26602 3' -51.7 NC_005357.1 + 18292 0.72 0.447002
Target:  5'- aGCGGGCcgguGGCGACgguguaauagacACGGCAguagcGGCGCa -3'
miRNA:   3'- gCGUCCGu---UUGUUGa-----------UGCCGU-----UCGCG- -5'
26602 3' -51.7 NC_005357.1 + 2036 0.73 0.428676
Target:  5'- gCGCAGGCGAuAgAAC-ACGGC--GCGCa -3'
miRNA:   3'- -GCGUCCGUU-UgUUGaUGCCGuuCGCG- -5'
26602 3' -51.7 NC_005357.1 + 8881 0.73 0.425665
Target:  5'- aGCGGGCGcgGGCAucauugugaauggcGCUAuCGGC-GGCGCg -3'
miRNA:   3'- gCGUCCGU--UUGU--------------UGAU-GCCGuUCGCG- -5'
26602 3' -51.7 NC_005357.1 + 41255 0.82 0.126014
Target:  5'- gGCAGcGCGAuACGGCUguccuucaccaucgACGGCGAGCGCa -3'
miRNA:   3'- gCGUC-CGUU-UGUUGA--------------UGCCGUUCGCG- -5'
26602 3' -51.7 NC_005357.1 + 9734 0.81 0.134799
Target:  5'- cCGCGGGCGAACuGCUcGUGGUggGCGCg -3'
miRNA:   3'- -GCGUCCGUUUGuUGA-UGCCGuuCGCG- -5'
26602 3' -51.7 NC_005357.1 + 25603 0.77 0.251148
Target:  5'- -cCAGGCAGugGCAACcACGGC-GGCGCg -3'
miRNA:   3'- gcGUCCGUU--UGUUGaUGCCGuUCGCG- -5'
26602 3' -51.7 NC_005357.1 + 13440 0.77 0.258036
Target:  5'- gGCAGGCccgcCAGCUugGCGGCcucGGGCGCg -3'
miRNA:   3'- gCGUCCGuuu-GUUGA--UGCCG---UUCGCG- -5'
26602 3' -51.7 NC_005357.1 + 34911 0.77 0.258036
Target:  5'- gCGCAcGGUAGACAACgccaccuCGGCAaccugcugGGCGCg -3'
miRNA:   3'- -GCGU-CCGUUUGUUGau-----GCCGU--------UCGCG- -5'
26602 3' -51.7 NC_005357.1 + 39833 0.75 0.31061
Target:  5'- uCGUuccGGUu-GCAACaggGCGGCAAGCGCg -3'
miRNA:   3'- -GCGu--CCGuuUGUUGa--UGCCGUUCGCG- -5'
26602 3' -51.7 NC_005357.1 + 39956 0.74 0.370946
Target:  5'- gGCAGGCuugguuccuGGACAAa---GGCGAGCGCc -3'
miRNA:   3'- gCGUCCG---------UUUGUUgaugCCGUUCGCG- -5'
26602 3' -51.7 NC_005357.1 + 10858 0.73 0.399144
Target:  5'- aGCAGGCccuGCGugGCUuCGGUcGGCGCg -3'
miRNA:   3'- gCGUCCGuu-UGU--UGAuGCCGuUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.