miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26602 5' -60 NC_005357.1 + 21397 0.66 0.417233
Target:  5'- uGGGCCUGCGCGaGCaUGgAaacgaacuccacGUUcaggucaacgcCCUGCa -3'
miRNA:   3'- -CCCGGACGCGC-CGcACgU------------CAA-----------GGACG- -5'
26602 5' -60 NC_005357.1 + 13459 0.66 0.407982
Target:  5'- cGGCCUcggGCGCGGUGU-CGGgcaugaCCUGg -3'
miRNA:   3'- cCCGGA---CGCGCCGCAcGUCaa----GGACg -5'
26602 5' -60 NC_005357.1 + 34706 0.66 0.39886
Target:  5'- cGGCCgccgaGCGUGcGC-UGCAGUUCaucgGCa -3'
miRNA:   3'- cCCGGa----CGCGC-CGcACGUCAAGga--CG- -5'
26602 5' -60 NC_005357.1 + 10718 0.66 0.39886
Target:  5'- -aGCCcgcGCGCGGCGggcuggucagGCGGUg-CUGCa -3'
miRNA:   3'- ccCGGa--CGCGCCGCa---------CGUCAagGACG- -5'
26602 5' -60 NC_005357.1 + 7254 0.66 0.39886
Target:  5'- cGGGCCgaUGuCGcCGGCcuuGUGCAGcUUCUcgGCg -3'
miRNA:   3'- -CCCGG--AC-GC-GCCG---CACGUC-AAGGa-CG- -5'
26602 5' -60 NC_005357.1 + 17745 0.66 0.389871
Target:  5'- uGGUg-GCGaaaccccaGGUGUGCAGUUCgaGCa -3'
miRNA:   3'- cCCGgaCGCg-------CCGCACGUCAAGgaCG- -5'
26602 5' -60 NC_005357.1 + 15378 0.66 0.381015
Target:  5'- cGGUgaGCGCGuccGCGUGCGGg-CCgGCg -3'
miRNA:   3'- cCCGgaCGCGC---CGCACGUCaaGGaCG- -5'
26602 5' -60 NC_005357.1 + 25829 0.66 0.372294
Target:  5'- cGGGCCgccguugGCGcCGGU---CAGUUCCaUGCu -3'
miRNA:   3'- -CCCGGa------CGC-GCCGcacGUCAAGG-ACG- -5'
26602 5' -60 NC_005357.1 + 38762 0.67 0.355264
Target:  5'- gGGGCgUUGUGCaGGCGUcCGGUUgCUUGUg -3'
miRNA:   3'- -CCCG-GACGCG-CCGCAcGUCAA-GGACG- -5'
26602 5' -60 NC_005357.1 + 32920 0.67 0.346957
Target:  5'- cGGCCUGCaCGGC-UGCuGUUCg-GCc -3'
miRNA:   3'- cCCGGACGcGCCGcACGuCAAGgaCG- -5'
26602 5' -60 NC_005357.1 + 1882 0.67 0.346957
Target:  5'- uGGCCgGCGCuggccgggugGGCGaacaGCAGcgggauuuUUCCUGCg -3'
miRNA:   3'- cCCGGaCGCG----------CCGCa---CGUC--------AAGGACG- -5'
26602 5' -60 NC_005357.1 + 28402 0.67 0.346957
Target:  5'- -cGCCggcgGCGCGGCGccaGUAGaugCCUGUc -3'
miRNA:   3'- ccCGGa---CGCGCCGCa--CGUCaa-GGACG- -5'
26602 5' -60 NC_005357.1 + 18294 0.67 0.346957
Target:  5'- cGGGCCggugGCGaCGGUGUaauagacacgGCAGUagCgGCg -3'
miRNA:   3'- -CCCGGa---CGC-GCCGCA----------CGUCAagGaCG- -5'
26602 5' -60 NC_005357.1 + 10071 0.67 0.33879
Target:  5'- gGGGCCUcgGCGGCGaccGCAGcgaCCUGg -3'
miRNA:   3'- -CCCGGAcgCGCCGCa--CGUCaa-GGACg -5'
26602 5' -60 NC_005357.1 + 14995 0.67 0.33879
Target:  5'- aGGGCCUGCGgccgccgGGCGcGguGcgCCagGCg -3'
miRNA:   3'- -CCCGGACGCg------CCGCaCguCaaGGa-CG- -5'
26602 5' -60 NC_005357.1 + 448 0.67 0.322878
Target:  5'- uGGGCugCUGCGCGGCcagcuUGCGGgcgCUGUc -3'
miRNA:   3'- -CCCG--GACGCGCCGc----ACGUCaagGACG- -5'
26602 5' -60 NC_005357.1 + 13309 0.67 0.322878
Target:  5'- cGGCCUcGCGCGcGUGaccgGCAGcaagUCCcGCa -3'
miRNA:   3'- cCCGGA-CGCGC-CGCa---CGUCa---AGGaCG- -5'
26602 5' -60 NC_005357.1 + 26046 0.68 0.307531
Target:  5'- -aGCCcGCGCGGCGgGCGcGcUCCaUGCg -3'
miRNA:   3'- ccCGGaCGCGCCGCaCGU-CaAGG-ACG- -5'
26602 5' -60 NC_005357.1 + 938 0.68 0.292023
Target:  5'- gGGGCCgaucuguccguccUGCGCGGUGcccacgGCAG--CUUGCa -3'
miRNA:   3'- -CCCGG-------------ACGCGCCGCa-----CGUCaaGGACG- -5'
26602 5' -60 NC_005357.1 + 14641 0.68 0.285566
Target:  5'- cGG-CUGCGCGGCGcGCGcUUCgUGUa -3'
miRNA:   3'- cCCgGACGCGCCGCaCGUcAAGgACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.