miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26604 3' -58.8 NC_005357.1 + 36618 1.11 0.000212
Target:  5'- aCGCCAUGCCCGACUAUCCGCUGGCGCu -3'
miRNA:   3'- -GCGGUACGGGCUGAUAGGCGACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 12724 0.75 0.119708
Target:  5'- uCGCCcgGCCCGuugguGCUGggugCCGCgcccagacgcuUGGCGCg -3'
miRNA:   3'- -GCGGuaCGGGC-----UGAUa---GGCG-----------ACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 6352 0.74 0.145328
Target:  5'- gCGCCcgGCCCGAagg-CCGg-GGCGCu -3'
miRNA:   3'- -GCGGuaCGGGCUgauaGGCgaCCGCG- -5'
26604 3' -58.8 NC_005357.1 + 28868 0.74 0.145328
Target:  5'- gCGCCGcGCCaCGucCUcgCUGCUGGCGUa -3'
miRNA:   3'- -GCGGUaCGG-GCu-GAuaGGCGACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 11579 0.72 0.180663
Target:  5'- aGCCAUGCcgcccagggccgCCGGCUggCCGCcgGGCaGCa -3'
miRNA:   3'- gCGGUACG------------GGCUGAuaGGCGa-CCG-CG- -5'
26604 3' -58.8 NC_005357.1 + 14990 0.72 0.180663
Target:  5'- gCGCCAggGCCUG-Cgg-CCGCcgGGCGCg -3'
miRNA:   3'- -GCGGUa-CGGGCuGauaGGCGa-CCGCG- -5'
26604 3' -58.8 NC_005357.1 + 28965 0.71 0.211972
Target:  5'- gGUCAUGCCCGACaccgcgCCcgaggccgccaaGCUGGCGg -3'
miRNA:   3'- gCGGUACGGGCUGaua---GG------------CGACCGCg -5'
26604 3' -58.8 NC_005357.1 + 41811 0.71 0.211972
Target:  5'- aCGCCGUGuCCaCGGCg--CUGCUGGC-Cg -3'
miRNA:   3'- -GCGGUAC-GG-GCUGauaGGCGACCGcG- -5'
26604 3' -58.8 NC_005357.1 + 35016 0.71 0.211972
Target:  5'- gGCCAuccggUGCCCGGCUucaaGCUGGUGg -3'
miRNA:   3'- gCGGU-----ACGGGCUGAuaggCGACCGCg -5'
26604 3' -58.8 NC_005357.1 + 26116 0.71 0.217623
Target:  5'- gCGCCAUG-CCGGCaugUGUUCGUcgcggcagauuUGGCGCa -3'
miRNA:   3'- -GCGGUACgGGCUG---AUAGGCG-----------ACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 36513 0.71 0.223403
Target:  5'- cCGCCAgcggcgaaaagaUGCCgGACgAUCUGCggugGGCGUu -3'
miRNA:   3'- -GCGGU------------ACGGgCUGaUAGGCGa---CCGCG- -5'
26604 3' -58.8 NC_005357.1 + 18754 0.7 0.241528
Target:  5'- uGUCcgGCCCGACcgagggUCGcCUGGUGCa -3'
miRNA:   3'- gCGGuaCGGGCUGaua---GGC-GACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 14875 0.7 0.247836
Target:  5'- gCGCCuuuaaguUGCCCGGCUuucaggGUCUGCgcGGCGa -3'
miRNA:   3'- -GCGGu------ACGGGCUGA------UAGGCGa-CCGCg -5'
26604 3' -58.8 NC_005357.1 + 27422 0.7 0.252981
Target:  5'- gCGCCuggcgcaccgcGCCCGGCgg-CCGCaggcccUGGCGCu -3'
miRNA:   3'- -GCGGua---------CGGGCUGauaGGCG------ACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 15121 0.7 0.260862
Target:  5'- uGCCuaccagGCCCGACcccaUGCUGGCGg -3'
miRNA:   3'- gCGGua----CGGGCUGauagGCGACCGCg -5'
26604 3' -58.8 NC_005357.1 + 37741 0.7 0.260862
Target:  5'- gGCCAUucucGCCgCG-CUAUCCggcgcGCUGGUGCc -3'
miRNA:   3'- gCGGUA----CGG-GCuGAUAGG-----CGACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 29558 0.7 0.263533
Target:  5'- aCGCCGUGCUCGGgguaucgcgucagguCgg-CCGCgcccaGGCGCg -3'
miRNA:   3'- -GCGGUACGGGCU---------------GauaGGCGa----CCGCG- -5'
26604 3' -58.8 NC_005357.1 + 7546 0.7 0.27444
Target:  5'- gCGgCGUGCUCGA---UCCGC-GGCGCc -3'
miRNA:   3'- -GCgGUACGGGCUgauAGGCGaCCGCG- -5'
26604 3' -58.8 NC_005357.1 + 29745 0.69 0.288578
Target:  5'- aCGCCGUagaacucgGCCuCGGCUG-CUGCcaGGCGCg -3'
miRNA:   3'- -GCGGUA--------CGG-GCUGAUaGGCGa-CCGCG- -5'
26604 3' -58.8 NC_005357.1 + 20766 0.69 0.288578
Target:  5'- gCGCCGcGCUCGACUcAUCgCGC-GGCuGCa -3'
miRNA:   3'- -GCGGUaCGGGCUGA-UAG-GCGaCCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.