miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26604 3' -58.8 NC_005357.1 + 1757 0.69 0.303282
Target:  5'- gGUCAUGgCCGGCc-UgCGcCUGGCGCg -3'
miRNA:   3'- gCGGUACgGGCUGauAgGC-GACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 1993 0.65 0.479744
Target:  5'- uGCCGUggcugaucuugagGCCCaGGCgc-UCGCUGGCGa -3'
miRNA:   3'- gCGGUA-------------CGGG-CUGauaGGCGACCGCg -5'
26604 3' -58.8 NC_005357.1 + 2107 0.67 0.403402
Target:  5'- uCGCCGUGUCgucgguauaGAUUGcgCCGUUGGCGa -3'
miRNA:   3'- -GCGGUACGGg--------CUGAUa-GGCGACCGCg -5'
26604 3' -58.8 NC_005357.1 + 2726 0.68 0.354164
Target:  5'- gGCCGgacgcuugagcgcgGCCCGGCg--CUGCUcgGGCGUg -3'
miRNA:   3'- gCGGUa-------------CGGGCUGauaGGCGA--CCGCG- -5'
26604 3' -58.8 NC_005357.1 + 3176 0.69 0.310847
Target:  5'- uGgCAaGCCCGGC-GUCCGCUG-CGUa -3'
miRNA:   3'- gCgGUaCGGGCUGaUAGGCGACcGCG- -5'
26604 3' -58.8 NC_005357.1 + 5101 0.69 0.310847
Target:  5'- gGCCG-GCCCaGC-GUCCggugcgGCUGGCGCc -3'
miRNA:   3'- gCGGUaCGGGcUGaUAGG------CGACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 6352 0.74 0.145328
Target:  5'- gCGCCcgGCCCGAagg-CCGg-GGCGCu -3'
miRNA:   3'- -GCGGuaCGGGCUgauaGGCgaCCGCG- -5'
26604 3' -58.8 NC_005357.1 + 6396 0.67 0.390691
Target:  5'- gGCCGgccgGCCCgGugUAgucgcggcccaugUCGUUGGCGCc -3'
miRNA:   3'- gCGGUa---CGGG-CugAUa------------GGCGACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 7166 0.66 0.431501
Target:  5'- aGCCcagGCCCGACg---CGCUGaCGCc -3'
miRNA:   3'- gCGGua-CGGGCUGauagGCGACcGCG- -5'
26604 3' -58.8 NC_005357.1 + 7546 0.7 0.27444
Target:  5'- gCGgCGUGCUCGA---UCCGC-GGCGCc -3'
miRNA:   3'- -GCgGUACGGGCUgauAGGCGaCCGCG- -5'
26604 3' -58.8 NC_005357.1 + 7734 0.67 0.422007
Target:  5'- aCGCUcgGCggCCGGCUugCUGUUGGCGa -3'
miRNA:   3'- -GCGGuaCG--GGCUGAuaGGCGACCGCg -5'
26604 3' -58.8 NC_005357.1 + 8363 0.67 0.394296
Target:  5'- gGCCGggaUGUCCGGCUcgaacccggccUCgCGCUGGCuGCg -3'
miRNA:   3'- gCGGU---ACGGGCUGAu----------AG-GCGACCG-CG- -5'
26604 3' -58.8 NC_005357.1 + 8718 0.67 0.376489
Target:  5'- uGCCgaacacgaagauGUGCCCGGCggg-CGC-GGCGCu -3'
miRNA:   3'- gCGG------------UACGGGCUGauagGCGaCCGCG- -5'
26604 3' -58.8 NC_005357.1 + 8937 0.68 0.342535
Target:  5'- gGCCGUGCCgGAUUcgCCaGCggUGGcCGUg -3'
miRNA:   3'- gCGGUACGGgCUGAuaGG-CG--ACC-GCG- -5'
26604 3' -58.8 NC_005357.1 + 8984 0.68 0.342535
Target:  5'- gGCCGUGCCgGAUUcgCCaGCggUGGcCGUg -3'
miRNA:   3'- gCGGUACGGgCUGAuaGG-CG--ACC-GCG- -5'
26604 3' -58.8 NC_005357.1 + 9202 0.67 0.422951
Target:  5'- gGCC-UGCUCGGCggcgcggcgcacguUCUGC-GGCGCg -3'
miRNA:   3'- gCGGuACGGGCUGau------------AGGCGaCCGCG- -5'
26604 3' -58.8 NC_005357.1 + 9224 0.68 0.359232
Target:  5'- gGCCGUGCCgCGAUagccagcggUggCCGUgccgagGGCGCc -3'
miRNA:   3'- gCGGUACGG-GCUG---------AuaGGCGa-----CCGCG- -5'
26604 3' -58.8 NC_005357.1 + 9492 0.68 0.359232
Target:  5'- gCGUCAUGCCaGcCUGuUCCGCcgUGGCGa -3'
miRNA:   3'- -GCGGUACGGgCuGAU-AGGCG--ACCGCg -5'
26604 3' -58.8 NC_005357.1 + 11579 0.72 0.180663
Target:  5'- aGCCAUGCcgcccagggccgCCGGCUggCCGCcgGGCaGCa -3'
miRNA:   3'- gCGGUACG------------GGCUGAuaGGCGa-CCG-CG- -5'
26604 3' -58.8 NC_005357.1 + 12025 0.66 0.459721
Target:  5'- gGCCGUGgCCGGCgagGUCUugcccaGCgugucgaagucgaUGGCGCc -3'
miRNA:   3'- gCGGUACgGGCUGa--UAGG------CG-------------ACCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.