miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26604 3' -58.8 NC_005357.1 + 12281 0.67 0.420123
Target:  5'- cCGCUgAUGUCCGACgcggugcaggCCGgcggcguguuCUGGCGCg -3'
miRNA:   3'- -GCGG-UACGGGCUGaua-------GGC----------GACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 12724 0.75 0.119708
Target:  5'- uCGCCcgGCCCGuugguGCUGggugCCGCgcccagacgcuUGGCGCg -3'
miRNA:   3'- -GCGGuaCGGGC-----UGAUa---GGCG-----------ACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 13607 0.66 0.431501
Target:  5'- gGCCGcaaCCCGACgacggCgCGCUGGCuGCu -3'
miRNA:   3'- gCGGUac-GGGCUGaua--G-GCGACCG-CG- -5'
26604 3' -58.8 NC_005357.1 + 14714 0.69 0.288578
Target:  5'- aGuCCAUGaCCGGCggcgagCCGCUgccGGCGCg -3'
miRNA:   3'- gC-GGUACgGGCUGaua---GGCGA---CCGCG- -5'
26604 3' -58.8 NC_005357.1 + 14875 0.7 0.247836
Target:  5'- gCGCCuuuaaguUGCCCGGCUuucaggGUCUGCgcGGCGa -3'
miRNA:   3'- -GCGGu------ACGGGCUGA------UAGGCGa-CCGCg -5'
26604 3' -58.8 NC_005357.1 + 14990 0.72 0.180663
Target:  5'- gCGCCAggGCCUG-Cgg-CCGCcgGGCGCg -3'
miRNA:   3'- -GCGGUa-CGGGCuGauaGGCGa-CCGCG- -5'
26604 3' -58.8 NC_005357.1 + 15121 0.7 0.260862
Target:  5'- uGCCuaccagGCCCGACcccaUGCUGGCGg -3'
miRNA:   3'- gCGGua----CGGGCUGauagGCGACCGCg -5'
26604 3' -58.8 NC_005357.1 + 16297 0.69 0.295859
Target:  5'- gCGCCAaaucUGCCgCGACgaacacaugCCGgcaUGGCGCa -3'
miRNA:   3'- -GCGGU----ACGG-GCUGaua------GGCg--ACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 17280 0.67 0.422007
Target:  5'- uGCCGUccacGaagCCGGCg--CCGCgGGCGCg -3'
miRNA:   3'- gCGGUA----Cg--GGCUGauaGGCGaCCGCG- -5'
26604 3' -58.8 NC_005357.1 + 17935 0.67 0.422007
Target:  5'- gCGCCA-GCCCcuacGACU--UC-CUGGCGCa -3'
miRNA:   3'- -GCGGUaCGGG----CUGAuaGGcGACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 18514 0.68 0.367791
Target:  5'- aCGCCuAUG-CCGGCaUGgaagCCGCgGGCGUg -3'
miRNA:   3'- -GCGG-UACgGGCUG-AUa---GGCGaCCGCG- -5'
26604 3' -58.8 NC_005357.1 + 18589 0.66 0.47068
Target:  5'- uCGCC-UGCCUG-CUgGUCaCGCcGGUGCc -3'
miRNA:   3'- -GCGGuACGGGCuGA-UAG-GCGaCCGCG- -5'
26604 3' -58.8 NC_005357.1 + 18754 0.7 0.241528
Target:  5'- uGUCcgGCCCGACcgagggUCGcCUGGUGCa -3'
miRNA:   3'- gCGGuaCGGGCUGaua---GGC-GACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 19314 0.67 0.394296
Target:  5'- aGCCGUuaCCG-CUGUcgCCGUgGGCGCc -3'
miRNA:   3'- gCGGUAcgGGCuGAUA--GGCGaCCGCG- -5'
26604 3' -58.8 NC_005357.1 + 20727 0.67 0.376489
Target:  5'- -cCCAUcaGgCCGACaugCUGCUGGCGCc -3'
miRNA:   3'- gcGGUA--CgGGCUGauaGGCGACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 20766 0.69 0.288578
Target:  5'- gCGCCGcGCUCGACUcAUCgCGC-GGCuGCa -3'
miRNA:   3'- -GCGGUaCGGGCUGA-UAG-GCGaCCG-CG- -5'
26604 3' -58.8 NC_005357.1 + 22814 0.68 0.341716
Target:  5'- uGCCGgacugGCCCGACUucgCCGCgcUGccgacagccgacaGCGCg -3'
miRNA:   3'- gCGGUa----CGGGCUGAua-GGCG--AC-------------CGCG- -5'
26604 3' -58.8 NC_005357.1 + 23063 0.65 0.476713
Target:  5'- gGCCcUGgCCGACcucaacggcaauUCCGCcgccUGGCGCc -3'
miRNA:   3'- gCGGuACgGGCUGau----------AGGCG----ACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 24422 0.67 0.41264
Target:  5'- aGCCG-GCCCGAuUUGUCgGUgccGCGCg -3'
miRNA:   3'- gCGGUaCGGGCU-GAUAGgCGac-CGCG- -5'
26604 3' -58.8 NC_005357.1 + 24689 0.66 0.460712
Target:  5'- aCGuCCAcGCCCaGGCUGUCCaucGGUGCc -3'
miRNA:   3'- -GC-GGUaCGGG-CUGAUAGGcgaCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.