miRNA display CGI


Results 1 - 20 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26604 3' -58.8 NC_005357.1 + 41811 0.71 0.211972
Target:  5'- aCGCCGUGuCCaCGGCg--CUGCUGGC-Cg -3'
miRNA:   3'- -GCGGUAC-GG-GCUGauaGGCGACCGcG- -5'
26604 3' -58.8 NC_005357.1 + 40194 0.69 0.295859
Target:  5'- gGCCAagGCCCGGCguuUAUaCCGCgacaugGaGCGCg -3'
miRNA:   3'- gCGGUa-CGGGCUG---AUA-GGCGa-----C-CGCG- -5'
26604 3' -58.8 NC_005357.1 + 38870 0.66 0.449878
Target:  5'- aCGCCcaGCCCGcugcugcGCUAUUCGgC-GGCGCc -3'
miRNA:   3'- -GCGGuaCGGGC-------UGAUAGGC-GaCCGCG- -5'
26604 3' -58.8 NC_005357.1 + 37741 0.7 0.260862
Target:  5'- gGCCAUucucGCCgCG-CUAUCCggcgcGCUGGUGCc -3'
miRNA:   3'- gCGGUA----CGG-GCuGAUAGG-----CGACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 37143 0.66 0.467678
Target:  5'- aCGCCGUGgCCGACaacgCCGCgaacaucaacacggUGGC-Cg -3'
miRNA:   3'- -GCGGUACgGGCUGaua-GGCG--------------ACCGcG- -5'
26604 3' -58.8 NC_005357.1 + 36618 1.11 0.000212
Target:  5'- aCGCCAUGCCCGACUAUCCGCUGGCGCu -3'
miRNA:   3'- -GCGGUACGGGCUGAUAGGCGACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 36513 0.71 0.223403
Target:  5'- cCGCCAgcggcgaaaagaUGCCgGACgAUCUGCggugGGCGUu -3'
miRNA:   3'- -GCGGU------------ACGGgCUGaUAGGCGa---CCGCG- -5'
26604 3' -58.8 NC_005357.1 + 36083 0.66 0.47068
Target:  5'- gGCCuucggGCCgGGCgcuUUgGCUGGgGCg -3'
miRNA:   3'- gCGGua---CGGgCUGau-AGgCGACCgCG- -5'
26604 3' -58.8 NC_005357.1 + 35852 0.67 0.422007
Target:  5'- gGCCGUGCUgGGCUAcuuccucaaggaUgCGCUGaCGCc -3'
miRNA:   3'- gCGGUACGGgCUGAU------------AgGCGACcGCG- -5'
26604 3' -58.8 NC_005357.1 + 35054 0.66 0.47068
Target:  5'- cCGCgGUGCCCG-----CCGCUGGaCGa -3'
miRNA:   3'- -GCGgUACGGGCugauaGGCGACC-GCg -5'
26604 3' -58.8 NC_005357.1 + 35016 0.71 0.211972
Target:  5'- gGCCAuccggUGCCCGGCUucaaGCUGGUGg -3'
miRNA:   3'- gCGGU-----ACGGGCUGAuaggCGACCGCg -5'
26604 3' -58.8 NC_005357.1 + 34236 0.66 0.47068
Target:  5'- gGCCGUGCgCGAUgaaaUCGCcGGCaGCa -3'
miRNA:   3'- gCGGUACGgGCUGaua-GGCGaCCG-CG- -5'
26604 3' -58.8 NC_005357.1 + 33850 0.66 0.43822
Target:  5'- uCGCCGUgaccgucgugucgcGCCUGucGCUGcCCGCcaucGGCGCg -3'
miRNA:   3'- -GCGGUA--------------CGGGC--UGAUaGGCGa---CCGCG- -5'
26604 3' -58.8 NC_005357.1 + 30413 0.66 0.450857
Target:  5'- uCGCCG-GCCaCGGCcgcgCUGCUGGC-Cg -3'
miRNA:   3'- -GCGGUaCGG-GCUGaua-GGCGACCGcG- -5'
26604 3' -58.8 NC_005357.1 + 29745 0.69 0.288578
Target:  5'- aCGCCGUagaacucgGCCuCGGCUG-CUGCcaGGCGCg -3'
miRNA:   3'- -GCGGUA--------CGG-GCUGAUaGGCGa-CCGCG- -5'
26604 3' -58.8 NC_005357.1 + 29558 0.7 0.263533
Target:  5'- aCGCCGUGCUCGGgguaucgcgucagguCgg-CCGCgcccaGGCGCg -3'
miRNA:   3'- -GCGGUACGGGCU---------------GauaGGCGa----CCGCG- -5'
26604 3' -58.8 NC_005357.1 + 29132 0.68 0.359232
Target:  5'- aCGCCGgcCCCGGCgcgCUGCaaucGGCGCu -3'
miRNA:   3'- -GCGGUacGGGCUGauaGGCGa---CCGCG- -5'
26604 3' -58.8 NC_005357.1 + 28965 0.71 0.211972
Target:  5'- gGUCAUGCCCGACaccgcgCCcgaggccgccaaGCUGGCGg -3'
miRNA:   3'- gCGGUACGGGCUGaua---GG------------CGACCGCg -5'
26604 3' -58.8 NC_005357.1 + 28868 0.74 0.145328
Target:  5'- gCGCCGcGCCaCGucCUcgCUGCUGGCGUa -3'
miRNA:   3'- -GCGGUaCGG-GCu-GAuaGGCGACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 27422 0.7 0.252981
Target:  5'- gCGCCuggcgcaccgcGCCCGGCgg-CCGCaggcccUGGCGCu -3'
miRNA:   3'- -GCGGua---------CGGGCUGauaGGCG------ACCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.