miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26604 3' -58.8 NC_005357.1 + 12281 0.67 0.420123
Target:  5'- cCGCUgAUGUCCGACgcggugcaggCCGgcggcguguuCUGGCGCg -3'
miRNA:   3'- -GCGG-UACGGGCUGaua-------GGC----------GACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 24422 0.67 0.41264
Target:  5'- aGCCG-GCCCGAuUUGUCgGUgccGCGCg -3'
miRNA:   3'- gCGGUaCGGGCU-GAUAGgCGac-CGCG- -5'
26604 3' -58.8 NC_005357.1 + 2107 0.67 0.403402
Target:  5'- uCGCCGUGUCgucgguauaGAUUGcgCCGUUGGCGa -3'
miRNA:   3'- -GCGGUACGGg--------CUGAUa-GGCGACCGCg -5'
26604 3' -58.8 NC_005357.1 + 8363 0.67 0.394296
Target:  5'- gGCCGggaUGUCCGGCUcgaacccggccUCgCGCUGGCuGCg -3'
miRNA:   3'- gCGGU---ACGGGCUGAu----------AG-GCGACCG-CG- -5'
26604 3' -58.8 NC_005357.1 + 19314 0.67 0.394296
Target:  5'- aGCCGUuaCCG-CUGUcgCCGUgGGCGCc -3'
miRNA:   3'- gCGGUAcgGGCuGAUA--GGCGaCCGCG- -5'
26604 3' -58.8 NC_005357.1 + 6396 0.67 0.390691
Target:  5'- gGCCGgccgGCCCgGugUAgucgcggcccaugUCGUUGGCGCc -3'
miRNA:   3'- gCGGUa---CGGG-CugAUa------------GGCGACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 20727 0.67 0.376489
Target:  5'- -cCCAUcaGgCCGACaugCUGCUGGCGCc -3'
miRNA:   3'- gcGGUA--CgGGCUGauaGGCGACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 8718 0.67 0.376489
Target:  5'- uGCCgaacacgaagauGUGCCCGGCggg-CGC-GGCGCu -3'
miRNA:   3'- gCGG------------UACGGGCUGauagGCGaCCGCG- -5'
26604 3' -58.8 NC_005357.1 + 18514 0.68 0.367791
Target:  5'- aCGCCuAUG-CCGGCaUGgaagCCGCgGGCGUg -3'
miRNA:   3'- -GCGG-UACgGGCUG-AUa---GGCGaCCGCG- -5'
26604 3' -58.8 NC_005357.1 + 9492 0.68 0.359232
Target:  5'- gCGUCAUGCCaGcCUGuUCCGCcgUGGCGa -3'
miRNA:   3'- -GCGGUACGGgCuGAU-AGGCG--ACCGCg -5'
26604 3' -58.8 NC_005357.1 + 29132 0.68 0.359232
Target:  5'- aCGCCGgcCCCGGCgcgCUGCaaucGGCGCu -3'
miRNA:   3'- -GCGGUacGGGCUGauaGGCGa---CCGCG- -5'
26604 3' -58.8 NC_005357.1 + 9224 0.68 0.359232
Target:  5'- gGCCGUGCCgCGAUagccagcggUggCCGUgccgagGGCGCc -3'
miRNA:   3'- gCGGUACGG-GCUG---------AuaGGCGa-----CCGCG- -5'
26604 3' -58.8 NC_005357.1 + 2726 0.68 0.354164
Target:  5'- gGCCGgacgcuugagcgcgGCCCGGCg--CUGCUcgGGCGUg -3'
miRNA:   3'- gCGGUa-------------CGGGCUGauaGGCGA--CCGCG- -5'
26604 3' -58.8 NC_005357.1 + 8937 0.68 0.342535
Target:  5'- gGCCGUGCCgGAUUcgCCaGCggUGGcCGUg -3'
miRNA:   3'- gCGGUACGGgCUGAuaGG-CG--ACC-GCG- -5'
26604 3' -58.8 NC_005357.1 + 8984 0.68 0.342535
Target:  5'- gGCCGUGCCgGAUUcgCCaGCggUGGcCGUg -3'
miRNA:   3'- gCGGUACGGgCUGAuaGG-CG--ACC-GCG- -5'
26604 3' -58.8 NC_005357.1 + 22814 0.68 0.341716
Target:  5'- uGCCGgacugGCCCGACUucgCCGCgcUGccgacagccgacaGCGCg -3'
miRNA:   3'- gCGGUa----CGGGCUGAua-GGCG--AC-------------CGCG- -5'
26604 3' -58.8 NC_005357.1 + 25212 0.68 0.3344
Target:  5'- cCGCUG-GCCCGGCU---UGUUGGUGCg -3'
miRNA:   3'- -GCGGUaCGGGCUGAuagGCGACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 5101 0.69 0.310847
Target:  5'- gGCCG-GCCCaGC-GUCCggugcgGCUGGCGCc -3'
miRNA:   3'- gCGGUaCGGGcUGaUAGG------CGACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 3176 0.69 0.310847
Target:  5'- uGgCAaGCCCGGC-GUCCGCUG-CGUa -3'
miRNA:   3'- gCgGUaCGGGCUGaUAGGCGACcGCG- -5'
26604 3' -58.8 NC_005357.1 + 1757 0.69 0.303282
Target:  5'- gGUCAUGgCCGGCc-UgCGcCUGGCGCg -3'
miRNA:   3'- gCGGUACgGGCUGauAgGC-GACCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.