miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26605 5' -58.9 NC_005357.1 + 24314 0.67 0.358749
Target:  5'- uCgGCGagCAGCCGCgGGuCAGGCgGCa -3'
miRNA:   3'- uGgCGCagGUCGGUGgUC-GUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 31677 0.67 0.350244
Target:  5'- gGCCGaaGUCgAGCgCGCCcuuGGCGAGCaGCa -3'
miRNA:   3'- -UGGCg-CAGgUCG-GUGG---UCGUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 279 0.67 0.341884
Target:  5'- cACgGCGUCCAGUagcugCGCCGGaAGGC-GCg -3'
miRNA:   3'- -UGgCGCAGGUCG-----GUGGUCgUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 40063 0.67 0.341884
Target:  5'- --gGCGUCU-GCCACguGCAGGCcgaauUGCg -3'
miRNA:   3'- uggCGCAGGuCGGUGguCGUUCG-----ACG- -5'
26605 5' -58.9 NC_005357.1 + 8997 0.67 0.341884
Target:  5'- cGCCGCG-CgGgggcGCUuCCAGCAGGCgGCg -3'
miRNA:   3'- -UGGCGCaGgU----CGGuGGUCGUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 20360 0.67 0.341884
Target:  5'- aGCCGCGcgCCGaccGCgACCcgAGCAAGC-GCg -3'
miRNA:   3'- -UGGCGCa-GGU---CGgUGG--UCGUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 8984 0.68 0.333669
Target:  5'- gGCCGUG-CCGGauuCGCCAGCGguGGCcgUGCc -3'
miRNA:   3'- -UGGCGCaGGUCg--GUGGUCGU--UCG--ACG- -5'
26605 5' -58.9 NC_005357.1 + 8937 0.68 0.333669
Target:  5'- gGCCGUG-CCGGauuCGCCAGCGguGGCcgUGCc -3'
miRNA:   3'- -UGGCGCaGGUCg--GUGGUCGU--UCG--ACG- -5'
26605 5' -58.9 NC_005357.1 + 41965 0.68 0.333669
Target:  5'- gACCGCGa-CAG-CGCCcGCAAGCUGg -3'
miRNA:   3'- -UGGCGCagGUCgGUGGuCGUUCGACg -5'
26605 5' -58.9 NC_005357.1 + 35195 0.68 0.333669
Target:  5'- cCCGCG-CCAGUgGCCG--AAGUUGCa -3'
miRNA:   3'- uGGCGCaGGUCGgUGGUcgUUCGACG- -5'
26605 5' -58.9 NC_005357.1 + 23641 0.68 0.333669
Target:  5'- uUCGCGg-UAGCCGgCGGCGGGCaGCa -3'
miRNA:   3'- uGGCGCagGUCGGUgGUCGUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 9378 0.68 0.333669
Target:  5'- gGCCGCGUgcauugugCAGCCACUGcaugucgcGCAGGCcGCg -3'
miRNA:   3'- -UGGCGCAg-------GUCGGUGGU--------CGUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 10674 0.68 0.332856
Target:  5'- cGCCGUGUCCAGUUGCgucuugaCGGCAGcGC-GCa -3'
miRNA:   3'- -UGGCGCAGGUCGGUG-------GUCGUU-CGaCG- -5'
26605 5' -58.9 NC_005357.1 + 635 0.68 0.3256
Target:  5'- cACgGCGUCCGGCguCgAGUcggugcccaAGGCUGUa -3'
miRNA:   3'- -UGgCGCAGGUCGguGgUCG---------UUCGACG- -5'
26605 5' -58.9 NC_005357.1 + 27893 0.68 0.317676
Target:  5'- cGCUGuUGUCCGG-CGCCGGCGacguGGCUGa -3'
miRNA:   3'- -UGGC-GCAGGUCgGUGGUCGU----UCGACg -5'
26605 5' -58.9 NC_005357.1 + 8363 0.68 0.317676
Target:  5'- gGCCGggaUGUCCGGCUcgaacCCGGCcucgcgcuGGCUGCg -3'
miRNA:   3'- -UGGC---GCAGGUCGGu----GGUCGu-------UCGACG- -5'
26605 5' -58.9 NC_005357.1 + 1059 0.68 0.309898
Target:  5'- cGCCGCGaaCCGGCguCCAGUAAcGC-GCg -3'
miRNA:   3'- -UGGCGCa-GGUCGguGGUCGUU-CGaCG- -5'
26605 5' -58.9 NC_005357.1 + 41431 0.68 0.306064
Target:  5'- cGCUGCGgugaaccacggcaCCGGCCaggcgGCCAaguggcuGCAAGCUGCc -3'
miRNA:   3'- -UGGCGCa------------GGUCGG-----UGGU-------CGUUCGACG- -5'
26605 5' -58.9 NC_005357.1 + 18902 0.68 0.302267
Target:  5'- gACCGCGUgC-GCCGCCuggaaGGCGcGCUcGCg -3'
miRNA:   3'- -UGGCGCAgGuCGGUGG-----UCGUuCGA-CG- -5'
26605 5' -58.9 NC_005357.1 + 28869 0.68 0.301512
Target:  5'- cGCCGCG-CCAcguccucGCUGCUGGCGuAGUUGCu -3'
miRNA:   3'- -UGGCGCaGGU-------CGGUGGUCGU-UCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.