miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26605 5' -58.9 NC_005357.1 + 34886 0.66 0.403395
Target:  5'- cGCCGCGgaUCgAGCaCGCCGcCGAGC-GCa -3'
miRNA:   3'- -UGGCGC--AGgUCG-GUGGUcGUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 22499 0.66 0.403395
Target:  5'- gGCCGacaaggaGUUCGGCgGCgA-CAAGCUGCa -3'
miRNA:   3'- -UGGCg------CAGGUCGgUGgUcGUUCGACG- -5'
26605 5' -58.9 NC_005357.1 + 14963 0.66 0.402468
Target:  5'- uGCuCGCGUgaagucgCCGGUCGCCAGaauGGCgucgGCa -3'
miRNA:   3'- -UG-GCGCA-------GGUCGGUGGUCgu-UCGa---CG- -5'
26605 5' -58.9 NC_005357.1 + 32023 0.66 0.394188
Target:  5'- gUgGCGa--GGCCAUCGGCGcGCUGCa -3'
miRNA:   3'- uGgCGCaggUCGGUGGUCGUuCGACG- -5'
26605 5' -58.9 NC_005357.1 + 32328 0.66 0.394188
Target:  5'- gGCCgGCGUCCcgacaaccGCCGCCcaGGUc-GCUGCg -3'
miRNA:   3'- -UGG-CGCAGGu-------CGGUGG--UCGuuCGACG- -5'
26605 5' -58.9 NC_005357.1 + 29587 0.66 0.394188
Target:  5'- gGCCGCGcCCAGgCGCgCGGUuugccAGUUGUc -3'
miRNA:   3'- -UGGCGCaGGUCgGUG-GUCGu----UCGACG- -5'
26605 5' -58.9 NC_005357.1 + 11080 0.66 0.393275
Target:  5'- -aCGUGUCCGggucGCgCGCgAGCAccuugucGGCUGCg -3'
miRNA:   3'- ugGCGCAGGU----CG-GUGgUCGU-------UCGACG- -5'
26605 5' -58.9 NC_005357.1 + 33262 0.67 0.376187
Target:  5'- uAUCGCGgcaCGGCCACC-GCuGGCUaucGCg -3'
miRNA:   3'- -UGGCGCag-GUCGGUGGuCGuUCGA---CG- -5'
26605 5' -58.9 NC_005357.1 + 33214 0.67 0.376187
Target:  5'- uAUCGCGgcaCGGCCACC-GCuGGCUaucGCg -3'
miRNA:   3'- -UGGCGCag-GUCGGUGGuCGuUCGA---CG- -5'
26605 5' -58.9 NC_005357.1 + 33310 0.67 0.376187
Target:  5'- uAUCGCGgcaCGGCCACC-GCuGGCUaucGCg -3'
miRNA:   3'- -UGGCGCag-GUCGGUGGuCGuUCGA---CG- -5'
26605 5' -58.9 NC_005357.1 + 33358 0.67 0.376187
Target:  5'- uAUCGCGgcaCGGCCACC-GCuGGCUaucGCg -3'
miRNA:   3'- -UGGCGCag-GUCGGUGGuCGuUCGA---CG- -5'
26605 5' -58.9 NC_005357.1 + 33406 0.67 0.376187
Target:  5'- uAUCGCGgcaCGGCCACC-GCuGGCUaucGCg -3'
miRNA:   3'- -UGGCGCag-GUCGGUGGuCGuUCGA---CG- -5'
26605 5' -58.9 NC_005357.1 + 14597 0.67 0.376187
Target:  5'- -gCGCGgCCGgcGCCACC-GCGGGCaGCg -3'
miRNA:   3'- ugGCGCaGGU--CGGUGGuCGUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 25662 0.67 0.375301
Target:  5'- uGCCgGCGUCauguacgucauCAGCCGgcggauuUCGGCAAcGCUGCu -3'
miRNA:   3'- -UGG-CGCAG-----------GUCGGU-------GGUCGUU-CGACG- -5'
26605 5' -58.9 NC_005357.1 + 18270 0.67 0.367396
Target:  5'- cGCCGagaacuugCCGGCCGUCAGCGGGCcggugGCg -3'
miRNA:   3'- -UGGCgca-----GGUCGGUGGUCGUUCGa----CG- -5'
26605 5' -58.9 NC_005357.1 + 13876 0.67 0.367396
Target:  5'- cGCCGCGauggCCGGCgGCC-GCAAGgucgUGCc -3'
miRNA:   3'- -UGGCGCa---GGUCGgUGGuCGUUCg---ACG- -5'
26605 5' -58.9 NC_005357.1 + 29027 0.67 0.367396
Target:  5'- cGCCGCGcUUCGGCCaggucgauacccACCGGC-GGCUcGUa -3'
miRNA:   3'- -UGGCGC-AGGUCGG------------UGGUCGuUCGA-CG- -5'
26605 5' -58.9 NC_005357.1 + 32930 0.67 0.367396
Target:  5'- gGCUGCuGUUCGGCCAg-GGCGaccacGGCUGCg -3'
miRNA:   3'- -UGGCG-CAGGUCGGUggUCGU-----UCGACG- -5'
26605 5' -58.9 NC_005357.1 + 3539 0.67 0.362191
Target:  5'- uGCCGU-UCCAGgCGCCgccgaauagcgcagcAGCGGGCUGg -3'
miRNA:   3'- -UGGCGcAGGUCgGUGG---------------UCGUUCGACg -5'
26605 5' -58.9 NC_005357.1 + 23833 0.67 0.358749
Target:  5'- -gUGCGgcaCCGGCgugACCAGCAGGCagGCg -3'
miRNA:   3'- ugGCGCa--GGUCGg--UGGUCGUUCGa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.