miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26605 5' -58.9 NC_005357.1 + 24032 0.66 0.441547
Target:  5'- cGCCGaCGUggCC-GCCACCGGCGccaucGGCaagGCc -3'
miRNA:   3'- -UGGC-GCA--GGuCGGUGGUCGU-----UCGa--CG- -5'
26605 5' -58.9 NC_005357.1 + 11080 0.66 0.393275
Target:  5'- -aCGUGUCCGggucGCgCGCgAGCAccuugucGGCUGCg -3'
miRNA:   3'- ugGCGCAGGU----CG-GUGgUCGU-------UCGACG- -5'
26605 5' -58.9 NC_005357.1 + 8038 0.66 0.422212
Target:  5'- gGCCGcCGUCCuuGCCGCCGuccaugacgcGCGcccaggucGCUGCc -3'
miRNA:   3'- -UGGC-GCAGGu-CGGUGGU----------CGUu-------CGACG- -5'
26605 5' -58.9 NC_005357.1 + 27356 0.66 0.43085
Target:  5'- gGCCGaccucgcagcacuCGUCCAGCCAUuCGGCcAGCa-- -3'
miRNA:   3'- -UGGC-------------GCAGGUCGGUG-GUCGuUCGacg -5'
26605 5' -58.9 NC_005357.1 + 33701 0.66 0.428922
Target:  5'- cGCCGCGcccgCCGGgCACaucuucguguucggCAGCAAuCUGCg -3'
miRNA:   3'- -UGGCGCa---GGUCgGUG--------------GUCGUUcGACG- -5'
26605 5' -58.9 NC_005357.1 + 32328 0.66 0.394188
Target:  5'- gGCCgGCGUCCcgacaaccGCCGCCcaGGUc-GCUGCg -3'
miRNA:   3'- -UGG-CGCAGGu-------CGGUGG--UCGuuCGACG- -5'
26605 5' -58.9 NC_005357.1 + 18796 0.66 0.435694
Target:  5'- gGCCGCcaccuuguuggugaUCUGGCgGCgCAGgAAGCUGCg -3'
miRNA:   3'- -UGGCGc-------------AGGUCGgUG-GUCgUUCGACG- -5'
26605 5' -58.9 NC_005357.1 + 18270 0.67 0.367396
Target:  5'- cGCCGagaacuugCCGGCCGUCAGCGGGCcggugGCg -3'
miRNA:   3'- -UGGCgca-----GGUCGGUGGUCGUUCGa----CG- -5'
26605 5' -58.9 NC_005357.1 + 33262 0.67 0.376187
Target:  5'- uAUCGCGgcaCGGCCACC-GCuGGCUaucGCg -3'
miRNA:   3'- -UGGCGCag-GUCGGUGGuCGuUCGA---CG- -5'
26605 5' -58.9 NC_005357.1 + 8997 0.67 0.341884
Target:  5'- cGCCGCG-CgGgggcGCUuCCAGCAGGCgGCg -3'
miRNA:   3'- -UGGCGCaGgU----CGGuGGUCGUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 23833 0.67 0.358749
Target:  5'- -gUGCGgcaCCGGCgugACCAGCAGGCagGCg -3'
miRNA:   3'- ugGCGCa--GGUCGg--UGGUCGUUCGa-CG- -5'
26605 5' -58.9 NC_005357.1 + 24314 0.67 0.358749
Target:  5'- uCgGCGagCAGCCGCgGGuCAGGCgGCa -3'
miRNA:   3'- uGgCGCagGUCGGUGgUC-GUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 29027 0.67 0.367396
Target:  5'- cGCCGCGcUUCGGCCaggucgauacccACCGGC-GGCUcGUa -3'
miRNA:   3'- -UGGCGC-AGGUCGG------------UGGUCGuUCGA-CG- -5'
26605 5' -58.9 NC_005357.1 + 31677 0.67 0.350244
Target:  5'- gGCCGaaGUCgAGCgCGCCcuuGGCGAGCaGCa -3'
miRNA:   3'- -UGGCg-CAGgUCG-GUGG---UCGUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 20360 0.67 0.341884
Target:  5'- aGCCGCGcgCCGaccGCgACCcgAGCAAGC-GCg -3'
miRNA:   3'- -UGGCGCa-GGU---CGgUGG--UCGUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 25662 0.67 0.375301
Target:  5'- uGCCgGCGUCauguacgucauCAGCCGgcggauuUCGGCAAcGCUGCu -3'
miRNA:   3'- -UGG-CGCAG-----------GUCGGU-------GGUCGUU-CGACG- -5'
26605 5' -58.9 NC_005357.1 + 33214 0.67 0.376187
Target:  5'- uAUCGCGgcaCGGCCACC-GCuGGCUaucGCg -3'
miRNA:   3'- -UGGCGCag-GUCGGUGGuCGuUCGA---CG- -5'
26605 5' -58.9 NC_005357.1 + 279 0.67 0.341884
Target:  5'- cACgGCGUCCAGUagcugCGCCGGaAGGC-GCg -3'
miRNA:   3'- -UGgCGCAGGUCG-----GUGGUCgUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 33358 0.67 0.376187
Target:  5'- uAUCGCGgcaCGGCCACC-GCuGGCUaucGCg -3'
miRNA:   3'- -UGGCGCag-GUCGGUGGuCGuUCGA---CG- -5'
26605 5' -58.9 NC_005357.1 + 33406 0.67 0.376187
Target:  5'- uAUCGCGgcaCGGCCACC-GCuGGCUaucGCg -3'
miRNA:   3'- -UGGCGCag-GUCGGUGGuCGuUCGA---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.