miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26605 5' -58.9 NC_005357.1 + 7391 0.69 0.280243
Target:  5'- cACCGCGgcgaCCuuCCACCAGCuugAAGCcggGCa -3'
miRNA:   3'- -UGGCGCa---GGucGGUGGUCG---UUCGa--CG- -5'
26605 5' -58.9 NC_005357.1 + 7785 0.76 0.083744
Target:  5'- cGCCgGCGUCCAcccuucGCCGcCCAGCAGGC-GCu -3'
miRNA:   3'- -UGG-CGCAGGU------CGGU-GGUCGUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 8038 0.66 0.422212
Target:  5'- gGCCGcCGUCCuuGCCGCCGuccaugacgcGCGcccaggucGCUGCc -3'
miRNA:   3'- -UGGC-GCAGGu-CGGUGGU----------CGUu-------CGACG- -5'
26605 5' -58.9 NC_005357.1 + 8363 0.68 0.317676
Target:  5'- gGCCGggaUGUCCGGCUcgaacCCGGCcucgcgcuGGCUGCg -3'
miRNA:   3'- -UGGC---GCAGGUCGGu----GGUCGu-------UCGACG- -5'
26605 5' -58.9 NC_005357.1 + 8937 0.68 0.333669
Target:  5'- gGCCGUG-CCGGauuCGCCAGCGguGGCcgUGCc -3'
miRNA:   3'- -UGGCGCaGGUCg--GUGGUCGU--UCG--ACG- -5'
26605 5' -58.9 NC_005357.1 + 8984 0.68 0.333669
Target:  5'- gGCCGUG-CCGGauuCGCCAGCGguGGCcgUGCc -3'
miRNA:   3'- -UGGCGCaGGUCg--GUGGUCGU--UCG--ACG- -5'
26605 5' -58.9 NC_005357.1 + 8997 0.67 0.341884
Target:  5'- cGCCGCG-CgGgggcGCUuCCAGCAGGCgGCg -3'
miRNA:   3'- -UGGCGCaGgU----CGGuGGUCGUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 9378 0.68 0.333669
Target:  5'- gGCCGCGUgcauugugCAGCCACUGcaugucgcGCAGGCcGCg -3'
miRNA:   3'- -UGGCGCAg-------GUCGGUGGU--------CGUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 10674 0.68 0.332856
Target:  5'- cGCCGUGUCCAGUUGCgucuugaCGGCAGcGC-GCa -3'
miRNA:   3'- -UGGCGCAGGUCGGUG-------GUCGUU-CGaCG- -5'
26605 5' -58.9 NC_005357.1 + 11080 0.66 0.393275
Target:  5'- -aCGUGUCCGggucGCgCGCgAGCAccuugucGGCUGCg -3'
miRNA:   3'- ugGCGCAGGU----CG-GUGgUCGU-------UCGACG- -5'
26605 5' -58.9 NC_005357.1 + 11107 0.69 0.285266
Target:  5'- cGCCGCGaCCugggauuccagccgGGCCACCAcGCGGucgccaggcuucGCUGCc -3'
miRNA:   3'- -UGGCGCaGG--------------UCGGUGGU-CGUU------------CGACG- -5'
26605 5' -58.9 NC_005357.1 + 11584 0.69 0.28744
Target:  5'- uGCCGC--CCagGGCCGCCGGCuGGCcGCc -3'
miRNA:   3'- -UGGCGcaGG--UCGGUGGUCGuUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 13595 0.66 0.412737
Target:  5'- uUCGgcaaGUCCGGCCGCaacccgacgaCGGCGcgcuGGCUGCu -3'
miRNA:   3'- uGGCg---CAGGUCGGUG----------GUCGU----UCGACG- -5'
26605 5' -58.9 NC_005357.1 + 13760 0.71 0.18839
Target:  5'- cGCCGCG-CUggcgaGGCCGCCGGCAccgaucuGGCacUGCg -3'
miRNA:   3'- -UGGCGCaGG-----UCGGUGGUCGU-------UCG--ACG- -5'
26605 5' -58.9 NC_005357.1 + 13876 0.67 0.367396
Target:  5'- cGCCGCGauggCCGGCgGCC-GCAAGgucgUGCc -3'
miRNA:   3'- -UGGCGCa---GGUCGgUGGuCGUUCg---ACG- -5'
26605 5' -58.9 NC_005357.1 + 14269 0.75 0.108342
Target:  5'- aACgGCGUggucgaUCuGaCCACCGGCAAGCUGCu -3'
miRNA:   3'- -UGgCGCA------GGuC-GGUGGUCGUUCGACG- -5'
26605 5' -58.9 NC_005357.1 + 14597 0.67 0.376187
Target:  5'- -gCGCGgCCGgcGCCACC-GCGGGCaGCg -3'
miRNA:   3'- ugGCGCaGGU--CGGUGGuCGUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 14666 0.71 0.193551
Target:  5'- -aCGUGUCCgAGCCggacgagGgCAGCGAGUUGCg -3'
miRNA:   3'- ugGCGCAGG-UCGG-------UgGUCGUUCGACG- -5'
26605 5' -58.9 NC_005357.1 + 14963 0.66 0.402468
Target:  5'- uGCuCGCGUgaagucgCCGGUCGCCAGaauGGCgucgGCa -3'
miRNA:   3'- -UG-GCGCA-------GGUCGGUGGUCgu-UCGa---CG- -5'
26605 5' -58.9 NC_005357.1 + 15474 0.75 0.09947
Target:  5'- aGCUGcCGUCCAguugcaucGCCACCGGCAGGguUUGCa -3'
miRNA:   3'- -UGGC-GCAGGU--------CGGUGGUCGUUC--GACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.