miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26605 5' -58.9 NC_005357.1 + 188 0.66 0.431816
Target:  5'- uGCCgGCGUCauccccGCCAUCAGCAucauGGUgGCg -3'
miRNA:   3'- -UGG-CGCAGgu----CGGUGGUCGU----UCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 279 0.67 0.341884
Target:  5'- cACgGCGUCCAGUagcugCGCCGGaAGGC-GCg -3'
miRNA:   3'- -UGgCGCAGGUCG-----GUGGUCgUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 453 0.66 0.441547
Target:  5'- uGCUGCGcggCCAGCUugCGGgc-GCUGUc -3'
miRNA:   3'- -UGGCGCa--GGUCGGugGUCguuCGACG- -5'
26605 5' -58.9 NC_005357.1 + 635 0.68 0.3256
Target:  5'- cACgGCGUCCGGCguCgAGUcggugcccaAGGCUGUa -3'
miRNA:   3'- -UGgCGCAGGUCGguGgUCG---------UUCGACG- -5'
26605 5' -58.9 NC_005357.1 + 813 0.71 0.182358
Target:  5'- cGCCGCGcCCAGCCcuugccgaacgucgGCCaggugGGCAGGUUGg -3'
miRNA:   3'- -UGGCGCaGGUCGG--------------UGG-----UCGUUCGACg -5'
26605 5' -58.9 NC_005357.1 + 1059 0.68 0.309898
Target:  5'- cGCCGCGaaCCGGCguCCAGUAAcGC-GCg -3'
miRNA:   3'- -UGGCGCa-GGUCGguGGUCGUU-CGaCG- -5'
26605 5' -58.9 NC_005357.1 + 1304 0.71 0.199369
Target:  5'- cGCCGCGcCCagggcgacGGCCACCAGgccgaCAAGC-GCg -3'
miRNA:   3'- -UGGCGCaGG--------UCGGUGGUC-----GUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 1708 0.71 0.204791
Target:  5'- cGCCGUGggCCGGCgUGCCGGCGAGg-GCg -3'
miRNA:   3'- -UGGCGCa-GGUCG-GUGGUCGUUCgaCG- -5'
26605 5' -58.9 NC_005357.1 + 2108 0.69 0.285266
Target:  5'- cGCCGUGUCgucgguauagauugcGCCGuuGGCGAGUUGCa -3'
miRNA:   3'- -UGGCGCAGgu-------------CGGUggUCGUUCGACG- -5'
26605 5' -58.9 NC_005357.1 + 2572 0.68 0.29478
Target:  5'- uGCCGgcuuugaGUUCAGCUugcaagGCCAGCAGGUUGg -3'
miRNA:   3'- -UGGCg------CAGGUCGG------UGGUCGUUCGACg -5'
26605 5' -58.9 NC_005357.1 + 2847 0.71 0.199369
Target:  5'- aGCgGCG-CCAG-CACCAGCGAGggGCc -3'
miRNA:   3'- -UGgCGCaGGUCgGUGGUCGUUCgaCG- -5'
26605 5' -58.9 NC_005357.1 + 3539 0.67 0.362191
Target:  5'- uGCCGU-UCCAGgCGCCgccgaauagcgcagcAGCGGGCUGg -3'
miRNA:   3'- -UGGCGcAGGUCgGUGG---------------UCGUUCGACg -5'
26605 5' -58.9 NC_005357.1 + 4015 0.77 0.068393
Target:  5'- -aCGCG-CCGGCCACCAGCGucauGCcGCg -3'
miRNA:   3'- ugGCGCaGGUCGGUGGUCGUu---CGaCG- -5'
26605 5' -58.9 NC_005357.1 + 4100 0.69 0.273191
Target:  5'- cGCCGUGguguuuccgCCAGCCugCGcuGCAGcGUUGCu -3'
miRNA:   3'- -UGGCGCa--------GGUCGGugGU--CGUU-CGACG- -5'
26605 5' -58.9 NC_005357.1 + 4431 0.72 0.16392
Target:  5'- uGCCGCG-CCagggggaAGCCGCCAGCGguGGCaccgucaUGCa -3'
miRNA:   3'- -UGGCGCaGG-------UCGGUGGUCGU--UCG-------ACG- -5'
26605 5' -58.9 NC_005357.1 + 4787 0.8 0.042823
Target:  5'- cACUGCGcCCAGCaCGCCGGCuggcGCUGCg -3'
miRNA:   3'- -UGGCGCaGGUCG-GUGGUCGuu--CGACG- -5'
26605 5' -58.9 NC_005357.1 + 4857 0.66 0.422212
Target:  5'- --aGCGgCCAGCUuccaauccucGCCGGCGAGCcacGCa -3'
miRNA:   3'- uggCGCaGGUCGG----------UGGUCGUUCGa--CG- -5'
26605 5' -58.9 NC_005357.1 + 5048 0.66 0.441547
Target:  5'- gAUgGCGUCCugcuugagcacaGGCCG-CGGCAGGUuuUGCg -3'
miRNA:   3'- -UGgCGCAGG------------UCGGUgGUCGUUCG--ACG- -5'
26605 5' -58.9 NC_005357.1 + 5653 0.71 0.198834
Target:  5'- cACgGCGgaaaCCAGCgGuagcuguUCAGCAAGCUGCu -3'
miRNA:   3'- -UGgCGCa---GGUCGgU-------GGUCGUUCGACG- -5'
26605 5' -58.9 NC_005357.1 + 6565 0.71 0.192509
Target:  5'- cCCGCGUagGGCUugccauccgccucgGCCAGgGGGCUGCg -3'
miRNA:   3'- uGGCGCAggUCGG--------------UGGUCgUUCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.