miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26605 5' -58.9 NC_005357.1 + 41965 0.68 0.333669
Target:  5'- gACCGCGa-CAG-CGCCcGCAAGCUGg -3'
miRNA:   3'- -UGGCGCagGUCgGUGGuCGUUCGACg -5'
26605 5' -58.9 NC_005357.1 + 41812 0.73 0.143539
Target:  5'- cGCCGUGUCCacggcgcugcuGGCCgACCcGCAGGCgGCc -3'
miRNA:   3'- -UGGCGCAGG-----------UCGG-UGGuCGUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 41527 0.66 0.441547
Target:  5'- uGCCGCGgCCGGgaugaaccCCACCAuGCuGGCccUGCu -3'
miRNA:   3'- -UGGCGCaGGUC--------GGUGGU-CGuUCG--ACG- -5'
26605 5' -58.9 NC_005357.1 + 41431 0.68 0.306064
Target:  5'- cGCUGCGgugaaccacggcaCCGGCCaggcgGCCAaguggcuGCAAGCUGCc -3'
miRNA:   3'- -UGGCGCa------------GGUCGG-----UGGU-------CGUUCGACG- -5'
26605 5' -58.9 NC_005357.1 + 40948 0.69 0.28744
Target:  5'- cACUGCGauaccCCGGCCuGCCAGgAGGCcGCc -3'
miRNA:   3'- -UGGCGCa----GGUCGG-UGGUCgUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 40557 0.7 0.227767
Target:  5'- gGCCaGCG-CCGGCCACgGGCugaacCUGCa -3'
miRNA:   3'- -UGG-CGCaGGUCGGUGgUCGuuc--GACG- -5'
26605 5' -58.9 NC_005357.1 + 40438 0.66 0.441547
Target:  5'- gGCCucaaGaUCAGCCACUGGCAGGUgGCg -3'
miRNA:   3'- -UGGcg--CaGGUCGGUGGUCGUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 40395 0.7 0.233843
Target:  5'- cGCCGUGUUCuaucGCCugcgcgacuucGCCAGCGAGC-GCc -3'
miRNA:   3'- -UGGCGCAGGu---CGG-----------UGGUCGUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 40063 0.67 0.341884
Target:  5'- --gGCGUCU-GCCACguGCAGGCcgaauUGCg -3'
miRNA:   3'- uggCGCAGGuCGGUGguCGUUCG-----ACG- -5'
26605 5' -58.9 NC_005357.1 + 38264 0.66 0.412737
Target:  5'- --gGCGgCCGGCUACCAGaucguGCUGUc -3'
miRNA:   3'- uggCGCaGGUCGGUGGUCguu--CGACG- -5'
26605 5' -58.9 NC_005357.1 + 38095 0.71 0.208662
Target:  5'- uCUGCuaccCCAGCCcgcaacuggaugacGCCGGCAAGCUGUc -3'
miRNA:   3'- uGGCGca--GGUCGG--------------UGGUCGUUCGACG- -5'
26605 5' -58.9 NC_005357.1 + 36786 1.11 0.000177
Target:  5'- aACCGCGUCCAGCCACCAGCAAGCUGCg -3'
miRNA:   3'- -UGGCGCAGGUCGGUGGUCGUUCGACG- -5'
26605 5' -58.9 NC_005357.1 + 36229 0.74 0.124795
Target:  5'- aGCCGCGcgCC-GUCACCuGCAAacGCUGCg -3'
miRNA:   3'- -UGGCGCa-GGuCGGUGGuCGUU--CGACG- -5'
26605 5' -58.9 NC_005357.1 + 36119 0.66 0.441547
Target:  5'- cGCCGCGUCUuGCacgCACCGGagaUAAGCcccgGCg -3'
miRNA:   3'- -UGGCGCAGGuCG---GUGGUC---GUUCGa---CG- -5'
26605 5' -58.9 NC_005357.1 + 35195 0.68 0.333669
Target:  5'- cCCGCG-CCAGUgGCCG--AAGUUGCa -3'
miRNA:   3'- uGGCGCaGGUCGgUGGUcgUUCGACG- -5'
26605 5' -58.9 NC_005357.1 + 35005 0.66 0.441547
Target:  5'- aACUGCuggCCGGCCAuCCGGUgcccggcuucAAGCUGg -3'
miRNA:   3'- -UGGCGca-GGUCGGU-GGUCG----------UUCGACg -5'
26605 5' -58.9 NC_005357.1 + 34886 0.66 0.403395
Target:  5'- cGCCGCGgaUCgAGCaCGCCGcCGAGC-GCa -3'
miRNA:   3'- -UGGCGC--AGgUCG-GUGGUcGUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 34692 0.69 0.252888
Target:  5'- cGCCaacaGCaagCCGGCCGCCgAGCGugcGCUGCa -3'
miRNA:   3'- -UGG----CGca-GGUCGGUGG-UCGUu--CGACG- -5'
26605 5' -58.9 NC_005357.1 + 34473 0.75 0.096668
Target:  5'- -gCGCG-CCgaGGCCACgGGCAAGCUGUc -3'
miRNA:   3'- ugGCGCaGG--UCGGUGgUCGUUCGACG- -5'
26605 5' -58.9 NC_005357.1 + 34162 0.66 0.416511
Target:  5'- aGCgUGCGUCagaucgaacaccugGGCCGCUugaagcGCAAGCUGCu -3'
miRNA:   3'- -UG-GCGCAGg-------------UCGGUGGu-----CGUUCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.