miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26605 5' -58.9 NC_005357.1 + 25359 0.7 0.216018
Target:  5'- uUCGCauagCCGGCCACCGgGCAGGC-GCc -3'
miRNA:   3'- uGGCGca--GGUCGGUGGU-CGUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 26733 0.71 0.188901
Target:  5'- aGCCGgG-CCA-CCGCCAGCGcgcccGCUGCg -3'
miRNA:   3'- -UGGCgCaGGUcGGUGGUCGUu----CGACG- -5'
26605 5' -58.9 NC_005357.1 + 24130 0.71 0.19199
Target:  5'- gUCGUaGUCCAGCCGgcugcgcgccuggcCCAGCGccucgacGGCUGCg -3'
miRNA:   3'- uGGCG-CAGGUCGGU--------------GGUCGU-------UCGACG- -5'
26605 5' -58.9 NC_005357.1 + 5653 0.71 0.198834
Target:  5'- cACgGCGgaaaCCAGCgGuagcuguUCAGCAAGCUGCu -3'
miRNA:   3'- -UGgCGCa---GGUCGgU-------GGUCGUUCGACG- -5'
26605 5' -58.9 NC_005357.1 + 1304 0.71 0.199369
Target:  5'- cGCCGCGcCCagggcgacGGCCACCAGgccgaCAAGC-GCg -3'
miRNA:   3'- -UGGCGCaGG--------UCGGUGGUC-----GUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 1708 0.71 0.204791
Target:  5'- cGCCGUGggCCGGCgUGCCGGCGAGg-GCg -3'
miRNA:   3'- -UGGCGCa-GGUCG-GUGGUCGUUCgaCG- -5'
26605 5' -58.9 NC_005357.1 + 32367 0.71 0.204791
Target:  5'- cGCCGCcgaggccCCGGCCGcCCAGCAGGaaGCc -3'
miRNA:   3'- -UGGCGca-----GGUCGGU-GGUCGUUCgaCG- -5'
26605 5' -58.9 NC_005357.1 + 38095 0.71 0.208662
Target:  5'- uCUGCuaccCCAGCCcgcaacuggaugacGCCGGCAAGCUGUc -3'
miRNA:   3'- uGGCGca--GGUCGG--------------UGGUCGUUCGACG- -5'
26605 5' -58.9 NC_005357.1 + 30123 0.71 0.21034
Target:  5'- gGCCGCG-CCAgaacacGCCGCCGGC---CUGCa -3'
miRNA:   3'- -UGGCGCaGGU------CGGUGGUCGuucGACG- -5'
26605 5' -58.9 NC_005357.1 + 813 0.71 0.182358
Target:  5'- cGCCGCGcCCAGCCcuugccgaacgucgGCCaggugGGCAGGUUGg -3'
miRNA:   3'- -UGGCGCaGGUCGG--------------UGG-----UCGUUCGACg -5'
26605 5' -58.9 NC_005357.1 + 24800 0.72 0.178919
Target:  5'- cCCGCGUUgaAGUCGCCguacAGCAucuGGCUGCg -3'
miRNA:   3'- uGGCGCAGg-UCGGUGG----UCGU---UCGACG- -5'
26605 5' -58.9 NC_005357.1 + 4431 0.72 0.16392
Target:  5'- uGCCGCG-CCagggggaAGCCGCCAGCGguGGCaccgucaUGCa -3'
miRNA:   3'- -UGGCGCaGG-------UCGGUGGUCGU--UCG-------ACG- -5'
26605 5' -58.9 NC_005357.1 + 4787 0.8 0.042823
Target:  5'- cACUGCGcCCAGCaCGCCGGCuggcGCUGCg -3'
miRNA:   3'- -UGGCGCaGGUCG-GUGGUCGuu--CGACG- -5'
26605 5' -58.9 NC_005357.1 + 4015 0.77 0.068393
Target:  5'- -aCGCG-CCGGCCACCAGCGucauGCcGCg -3'
miRNA:   3'- ugGCGCaGGUCGGUGGUCGUu---CGaCG- -5'
26605 5' -58.9 NC_005357.1 + 7785 0.76 0.083744
Target:  5'- cGCCgGCGUCCAcccuucGCCGcCCAGCAGGC-GCu -3'
miRNA:   3'- -UGG-CGCAGGU------CGGU-GGUCGUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 21753 0.76 0.083744
Target:  5'- gGCCGCGUCCacauaggacaGGCCGCCcGGCAcGgUGCu -3'
miRNA:   3'- -UGGCGCAGG----------UCGGUGG-UCGUuCgACG- -5'
26605 5' -58.9 NC_005357.1 + 27432 0.76 0.08619
Target:  5'- cACCGCGcCCGGCgGCC-GCAGGCccugGCg -3'
miRNA:   3'- -UGGCGCaGGUCGgUGGuCGUUCGa---CG- -5'
26605 5' -58.9 NC_005357.1 + 15474 0.75 0.09947
Target:  5'- aGCUGcCGUCCAguugcaucGCCACCGGCAGGguUUGCa -3'
miRNA:   3'- -UGGC-GCAGGU--------CGGUGGUCGUUC--GACG- -5'
26605 5' -58.9 NC_005357.1 + 36229 0.74 0.124795
Target:  5'- aGCCGCGcgCC-GUCACCuGCAAacGCUGCg -3'
miRNA:   3'- -UGGCGCa-GGuCGGUGGuCGUU--CGACG- -5'
26605 5' -58.9 NC_005357.1 + 21150 0.73 0.151734
Target:  5'- cGCCGUGUCCGcGCCcugguucaacaGCgCGGCcuGCUGCg -3'
miRNA:   3'- -UGGCGCAGGU-CGG-----------UG-GUCGuuCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.