miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26605 5' -58.9 NC_005357.1 + 36786 1.11 0.000177
Target:  5'- aACCGCGUCCAGCCACCAGCAAGCUGCg -3'
miRNA:   3'- -UGGCGCAGGUCGGUGGUCGUUCGACG- -5'
26605 5' -58.9 NC_005357.1 + 4787 0.8 0.042823
Target:  5'- cACUGCGcCCAGCaCGCCGGCuggcGCUGCg -3'
miRNA:   3'- -UGGCGCaGGUCG-GUGGUCGuu--CGACG- -5'
26605 5' -58.9 NC_005357.1 + 4015 0.77 0.068393
Target:  5'- -aCGCG-CCGGCCACCAGCGucauGCcGCg -3'
miRNA:   3'- ugGCGCaGGUCGGUGGUCGUu---CGaCG- -5'
26605 5' -58.9 NC_005357.1 + 7785 0.76 0.083744
Target:  5'- cGCCgGCGUCCAcccuucGCCGcCCAGCAGGC-GCu -3'
miRNA:   3'- -UGG-CGCAGGU------CGGU-GGUCGUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 21753 0.76 0.083744
Target:  5'- gGCCGCGUCCacauaggacaGGCCGCCcGGCAcGgUGCu -3'
miRNA:   3'- -UGGCGCAGG----------UCGGUGG-UCGUuCgACG- -5'
26605 5' -58.9 NC_005357.1 + 27432 0.76 0.08619
Target:  5'- cACCGCGcCCGGCgGCC-GCAGGCccugGCg -3'
miRNA:   3'- -UGGCGCaGGUCGgUGGuCGUUCGa---CG- -5'
26605 5' -58.9 NC_005357.1 + 29121 0.76 0.091286
Target:  5'- cGCCGCcuacaacgCCGGCC-CCGGCGcGCUGCa -3'
miRNA:   3'- -UGGCGca------GGUCGGuGGUCGUuCGACG- -5'
26605 5' -58.9 NC_005357.1 + 34473 0.75 0.096668
Target:  5'- -gCGCG-CCgaGGCCACgGGCAAGCUGUc -3'
miRNA:   3'- ugGCGCaGG--UCGGUGgUCGUUCGACG- -5'
26605 5' -58.9 NC_005357.1 + 15474 0.75 0.09947
Target:  5'- aGCUGcCGUCCAguugcaucGCCACCGGCAGGguUUGCa -3'
miRNA:   3'- -UGGC-GCAGGU--------CGGUGGUCGUUC--GACG- -5'
26605 5' -58.9 NC_005357.1 + 28977 0.75 0.105305
Target:  5'- cACCGCGcCCgaGGCCGCCaagcuGGCGGGcCUGCc -3'
miRNA:   3'- -UGGCGCaGG--UCGGUGG-----UCGUUC-GACG- -5'
26605 5' -58.9 NC_005357.1 + 14269 0.75 0.108342
Target:  5'- aACgGCGUggucgaUCuGaCCACCGGCAAGCUGCu -3'
miRNA:   3'- -UGgCGCA------GGuC-GGUGGUCGUUCGACG- -5'
26605 5' -58.9 NC_005357.1 + 36229 0.74 0.124795
Target:  5'- aGCCGCGcgCC-GUCACCuGCAAacGCUGCg -3'
miRNA:   3'- -UGGCGCa-GGuCGGUGGuCGUU--CGACG- -5'
26605 5' -58.9 NC_005357.1 + 24126 0.73 0.135751
Target:  5'- uGCCGUGUCUAuuacaccgucGCCACCGGCccGCUGa -3'
miRNA:   3'- -UGGCGCAGGU----------CGGUGGUCGuuCGACg -5'
26605 5' -58.9 NC_005357.1 + 25991 0.73 0.14314
Target:  5'- cGCCGUGUUCAacGCCGCCGGCGAuuaccccGCgGCc -3'
miRNA:   3'- -UGGCGCAGGU--CGGUGGUCGUU-------CGaCG- -5'
26605 5' -58.9 NC_005357.1 + 41812 0.73 0.143539
Target:  5'- cGCCGUGUCCacggcgcugcuGGCCgACCcGCAGGCgGCc -3'
miRNA:   3'- -UGGCGCAGG-----------UCGG-UGGuCGUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 20108 0.73 0.147585
Target:  5'- -gCGCGUUCGGCacgGCCAGCAGcaucguGCUGCc -3'
miRNA:   3'- ugGCGCAGGUCGg--UGGUCGUU------CGACG- -5'
26605 5' -58.9 NC_005357.1 + 21150 0.73 0.151734
Target:  5'- cGCCGUGUCCGcGCCcugguucaacaGCgCGGCcuGCUGCg -3'
miRNA:   3'- -UGGCGCAGGU-CGG-----------UG-GUCGuuCGACG- -5'
26605 5' -58.9 NC_005357.1 + 18662 0.72 0.15991
Target:  5'- aGCCGCGgcgcaUCGGCCcgguggcGCCGGCAuggcGCUGCu -3'
miRNA:   3'- -UGGCGCa----GGUCGG-------UGGUCGUu---CGACG- -5'
26605 5' -58.9 NC_005357.1 + 4431 0.72 0.16392
Target:  5'- uGCCGCG-CCagggggaAGCCGCCAGCGguGGCaccgucaUGCa -3'
miRNA:   3'- -UGGCGCaGG-------UCGGUGGUCGU--UCG-------ACG- -5'
26605 5' -58.9 NC_005357.1 + 16499 0.72 0.164823
Target:  5'- cGCgGCGaCaugcugGGCCACC-GCAAGCUGCa -3'
miRNA:   3'- -UGgCGCaGg-----UCGGUGGuCGUUCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.