Results 21 - 40 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26605 | 5' | -58.9 | NC_005357.1 | + | 24800 | 0.72 | 0.178919 |
Target: 5'- cCCGCGUUgaAGUCGCCguacAGCAucuGGCUGCg -3' miRNA: 3'- uGGCGCAGg-UCGGUGG----UCGU---UCGACG- -5' |
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26605 | 5' | -58.9 | NC_005357.1 | + | 813 | 0.71 | 0.182358 |
Target: 5'- cGCCGCGcCCAGCCcuugccgaacgucgGCCaggugGGCAGGUUGg -3' miRNA: 3'- -UGGCGCaGGUCGG--------------UGG-----UCGUUCGACg -5' |
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26605 | 5' | -58.9 | NC_005357.1 | + | 13760 | 0.71 | 0.18839 |
Target: 5'- cGCCGCG-CUggcgaGGCCGCCGGCAccgaucuGGCacUGCg -3' miRNA: 3'- -UGGCGCaGG-----UCGGUGGUCGU-------UCG--ACG- -5' |
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26605 | 5' | -58.9 | NC_005357.1 | + | 26733 | 0.71 | 0.188901 |
Target: 5'- aGCCGgG-CCA-CCGCCAGCGcgcccGCUGCg -3' miRNA: 3'- -UGGCgCaGGUcGGUGGUCGUu----CGACG- -5' |
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26605 | 5' | -58.9 | NC_005357.1 | + | 24130 | 0.71 | 0.19199 |
Target: 5'- gUCGUaGUCCAGCCGgcugcgcgccuggcCCAGCGccucgacGGCUGCg -3' miRNA: 3'- uGGCG-CAGGUCGGU--------------GGUCGU-------UCGACG- -5' |
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26605 | 5' | -58.9 | NC_005357.1 | + | 6565 | 0.71 | 0.192509 |
Target: 5'- cCCGCGUagGGCUugccauccgccucgGCCAGgGGGCUGCg -3' miRNA: 3'- uGGCGCAggUCGG--------------UGGUCgUUCGACG- -5' |
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26605 | 5' | -58.9 | NC_005357.1 | + | 14666 | 0.71 | 0.193551 |
Target: 5'- -aCGUGUCCgAGCCggacgagGgCAGCGAGUUGCg -3' miRNA: 3'- ugGCGCAGG-UCGG-------UgGUCGUUCGACG- -5' |
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26605 | 5' | -58.9 | NC_005357.1 | + | 5653 | 0.71 | 0.198834 |
Target: 5'- cACgGCGgaaaCCAGCgGuagcuguUCAGCAAGCUGCu -3' miRNA: 3'- -UGgCGCa---GGUCGgU-------GGUCGUUCGACG- -5' |
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26605 | 5' | -58.9 | NC_005357.1 | + | 2847 | 0.71 | 0.199369 |
Target: 5'- aGCgGCG-CCAG-CACCAGCGAGggGCc -3' miRNA: 3'- -UGgCGCaGGUCgGUGGUCGUUCgaCG- -5' |
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26605 | 5' | -58.9 | NC_005357.1 | + | 1304 | 0.71 | 0.199369 |
Target: 5'- cGCCGCGcCCagggcgacGGCCACCAGgccgaCAAGC-GCg -3' miRNA: 3'- -UGGCGCaGG--------UCGGUGGUC-----GUUCGaCG- -5' |
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26605 | 5' | -58.9 | NC_005357.1 | + | 1708 | 0.71 | 0.204791 |
Target: 5'- cGCCGUGggCCGGCgUGCCGGCGAGg-GCg -3' miRNA: 3'- -UGGCGCa-GGUCG-GUGGUCGUUCgaCG- -5' |
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26605 | 5' | -58.9 | NC_005357.1 | + | 32367 | 0.71 | 0.204791 |
Target: 5'- cGCCGCcgaggccCCGGCCGcCCAGCAGGaaGCc -3' miRNA: 3'- -UGGCGca-----GGUCGGU-GGUCGUUCgaCG- -5' |
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26605 | 5' | -58.9 | NC_005357.1 | + | 38095 | 0.71 | 0.208662 |
Target: 5'- uCUGCuaccCCAGCCcgcaacuggaugacGCCGGCAAGCUGUc -3' miRNA: 3'- uGGCGca--GGUCGG--------------UGGUCGUUCGACG- -5' |
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26605 | 5' | -58.9 | NC_005357.1 | + | 30123 | 0.71 | 0.21034 |
Target: 5'- gGCCGCG-CCAgaacacGCCGCCGGC---CUGCa -3' miRNA: 3'- -UGGCGCaGGU------CGGUGGUCGuucGACG- -5' |
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26605 | 5' | -58.9 | NC_005357.1 | + | 16672 | 0.71 | 0.21034 |
Target: 5'- uGCCGcCGcCCAGCagcgcgcCCAGCGuGCUGCc -3' miRNA: 3'- -UGGC-GCaGGUCGgu-----GGUCGUuCGACG- -5' |
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26605 | 5' | -58.9 | NC_005357.1 | + | 25359 | 0.7 | 0.216018 |
Target: 5'- uUCGCauagCCGGCCACCGgGCAGGC-GCc -3' miRNA: 3'- uGGCGca--GGUCGGUGGU-CGUUCGaCG- -5' |
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26605 | 5' | -58.9 | NC_005357.1 | + | 30831 | 0.7 | 0.221826 |
Target: 5'- cACUGCuGcCCGGCgGCCAGCcGGCgGCc -3' miRNA: 3'- -UGGCG-CaGGUCGgUGGUCGuUCGaCG- -5' |
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26605 | 5' | -58.9 | NC_005357.1 | + | 40557 | 0.7 | 0.227767 |
Target: 5'- gGCCaGCG-CCGGCCACgGGCugaacCUGCa -3' miRNA: 3'- -UGG-CGCaGGUCGGUGgUCGuuc--GACG- -5' |
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26605 | 5' | -58.9 | NC_005357.1 | + | 17864 | 0.7 | 0.227767 |
Target: 5'- gACCGUGgCCGGCCucGCCAucGCcgcGCUGCg -3' miRNA: 3'- -UGGCGCaGGUCGG--UGGU--CGuu-CGACG- -5' |
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26605 | 5' | -58.9 | NC_005357.1 | + | 40395 | 0.7 | 0.233843 |
Target: 5'- cGCCGUGUUCuaucGCCugcgcgacuucGCCAGCGAGC-GCc -3' miRNA: 3'- -UGGCGCAGGu---CGG-----------UGGUCGUUCGaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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