miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26605 5' -58.9 NC_005357.1 + 29121 0.76 0.091286
Target:  5'- cGCCGCcuacaacgCCGGCC-CCGGCGcGCUGCa -3'
miRNA:   3'- -UGGCGca------GGUCGGuGGUCGUuCGACG- -5'
26605 5' -58.9 NC_005357.1 + 40395 0.7 0.233843
Target:  5'- cGCCGUGUUCuaucGCCugcgcgacuucGCCAGCGAGC-GCc -3'
miRNA:   3'- -UGGCGCAGGu---CGG-----------UGGUCGUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 22942 0.69 0.273191
Target:  5'- cGCaGCGgCCuGCCACCGGCAccuggcgcaAGCUGa -3'
miRNA:   3'- -UGgCGCaGGuCGGUGGUCGU---------UCGACg -5'
26605 5' -58.9 NC_005357.1 + 24032 0.66 0.441547
Target:  5'- cGCCGaCGUggCC-GCCACCGGCGccaucGGCaagGCc -3'
miRNA:   3'- -UGGC-GCA--GGuCGGUGGUCGU-----UCGa--CG- -5'
26605 5' -58.9 NC_005357.1 + 24126 0.73 0.135751
Target:  5'- uGCCGUGUCUAuuacaccgucGCCACCGGCccGCUGa -3'
miRNA:   3'- -UGGCGCAGGU----------CGGUGGUCGuuCGACg -5'
26605 5' -58.9 NC_005357.1 + 25991 0.73 0.14314
Target:  5'- cGCCGUGUUCAacGCCGCCGGCGAuuaccccGCgGCc -3'
miRNA:   3'- -UGGCGCAGGU--CGGUGGUCGUU-------CGaCG- -5'
26605 5' -58.9 NC_005357.1 + 20108 0.73 0.147585
Target:  5'- -gCGCGUUCGGCacgGCCAGCAGcaucguGCUGCc -3'
miRNA:   3'- ugGCGCAGGUCGg--UGGUCGUU------CGACG- -5'
26605 5' -58.9 NC_005357.1 + 18662 0.72 0.15991
Target:  5'- aGCCGCGgcgcaUCGGCCcgguggcGCCGGCAuggcGCUGCu -3'
miRNA:   3'- -UGGCGCa----GGUCGG-------UGGUCGUu---CGACG- -5'
26605 5' -58.9 NC_005357.1 + 6565 0.71 0.192509
Target:  5'- cCCGCGUagGGCUugccauccgccucgGCCAGgGGGCUGCg -3'
miRNA:   3'- uGGCGCAggUCGG--------------UGGUCgUUCGACG- -5'
26605 5' -58.9 NC_005357.1 + 17864 0.7 0.227767
Target:  5'- gACCGUGgCCGGCCucGCCAucGCcgcGCUGCg -3'
miRNA:   3'- -UGGCGCaGGUCGG--UGGU--CGuu-CGACG- -5'
26605 5' -58.9 NC_005357.1 + 2847 0.71 0.199369
Target:  5'- aGCgGCG-CCAG-CACCAGCGAGggGCc -3'
miRNA:   3'- -UGgCGCaGGUCgGUGGUCGUUCgaCG- -5'
26605 5' -58.9 NC_005357.1 + 13760 0.71 0.18839
Target:  5'- cGCCGCG-CUggcgaGGCCGCCGGCAccgaucuGGCacUGCg -3'
miRNA:   3'- -UGGCGCaGG-----UCGGUGGUCGU-------UCG--ACG- -5'
26605 5' -58.9 NC_005357.1 + 34473 0.75 0.096668
Target:  5'- -gCGCG-CCgaGGCCACgGGCAAGCUGUc -3'
miRNA:   3'- ugGCGCaGG--UCGGUGgUCGUUCGACG- -5'
26605 5' -58.9 NC_005357.1 + 16672 0.71 0.21034
Target:  5'- uGCCGcCGcCCAGCagcgcgcCCAGCGuGCUGCc -3'
miRNA:   3'- -UGGC-GCaGGUCGgu-----GGUCGUuCGACG- -5'
26605 5' -58.9 NC_005357.1 + 28977 0.75 0.105305
Target:  5'- cACCGCGcCCgaGGCCGCCaagcuGGCGGGcCUGCc -3'
miRNA:   3'- -UGGCGCaGG--UCGGUGG-----UCGUUC-GACG- -5'
26605 5' -58.9 NC_005357.1 + 16499 0.72 0.164823
Target:  5'- cGCgGCGaCaugcugGGCCACC-GCAAGCUGCa -3'
miRNA:   3'- -UGgCGCaGg-----UCGGUGGuCGUUCGACG- -5'
26605 5' -58.9 NC_005357.1 + 30831 0.7 0.221826
Target:  5'- cACUGCuGcCCGGCgGCCAGCcGGCgGCc -3'
miRNA:   3'- -UGGCG-CaGGUCGgUGGUCGuUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 30216 0.7 0.240054
Target:  5'- uGCUGCGUCCcGaCCAggGGCAGGCaGCg -3'
miRNA:   3'- -UGGCGCAGGuC-GGUggUCGUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 14269 0.75 0.108342
Target:  5'- aACgGCGUggucgaUCuGaCCACCGGCAAGCUGCu -3'
miRNA:   3'- -UGgCGCA------GGuC-GGUGGUCGUUCGACG- -5'
26605 5' -58.9 NC_005357.1 + 41812 0.73 0.143539
Target:  5'- cGCCGUGUCCacggcgcugcuGGCCgACCcGCAGGCgGCc -3'
miRNA:   3'- -UGGCGCAGG-----------UCGG-UGGuCGUUCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.