Results 41 - 60 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26606 | 3' | -52.5 | NC_005357.1 | + | 15385 | 0.67 | 0.747417 |
Target: 5'- cGCGuCCgCGugCGGGCCggCGaagaugccggACGACCg -3' miRNA: 3'- -CGU-GGaGCugGUCUGGuaGU----------UGCUGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 28651 | 0.67 | 0.788957 |
Target: 5'- cGCGCagu-GCCAGAUCGgugcCGGCGGCCu -3' miRNA: 3'- -CGUGgagcUGGUCUGGUa---GUUGCUGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 32850 | 0.67 | 0.758017 |
Target: 5'- uCGCCU-GGCCgcAGACgGUCGGCG-CCg -3' miRNA: 3'- cGUGGAgCUGG--UCUGgUAGUUGCuGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 6640 | 0.67 | 0.788957 |
Target: 5'- cGCGCgCUUGGCCGGAgUGUCcGCGcucauggucugcGCCa -3' miRNA: 3'- -CGUG-GAGCUGGUCUgGUAGuUGC------------UGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 27295 | 0.67 | 0.758017 |
Target: 5'- cGCGCCUUGGCgaAGGCUucccaCGACGcCCa -3' miRNA: 3'- -CGUGGAGCUGg-UCUGGua---GUUGCuGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 27421 | 0.67 | 0.788957 |
Target: 5'- cGCGCCUggCGcACCGcGCC--CGGCGGCCg -3' miRNA: 3'- -CGUGGA--GC-UGGUcUGGuaGUUGCUGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 15758 | 0.67 | 0.7788 |
Target: 5'- cGCACCUCGuuGCCGccaauggugcGACgCA-CGACGGCa -3' miRNA: 3'- -CGUGGAGC--UGGU----------CUG-GUaGUUGCUGg -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 15604 | 0.67 | 0.751673 |
Target: 5'- cGCGCCaUCGGCCAGGaugcugacgguuuucCCuUCGAgGugCu -3' miRNA: 3'- -CGUGG-AGCUGGUCU---------------GGuAGUUgCugG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 39620 | 0.67 | 0.747417 |
Target: 5'- aGCACCU-GGCCcGACgaAUCGACGAa- -3' miRNA: 3'- -CGUGGAgCUGGuCUGg-UAGUUGCUgg -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 20170 | 0.67 | 0.74635 |
Target: 5'- uCGCUgaCGGCCGGcgaauacGCCAUCG-CGGCCg -3' miRNA: 3'- cGUGGa-GCUGGUC-------UGGUAGUuGCUGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 29753 | 0.67 | 0.76222 |
Target: 5'- cGgGCCUCGACaCGcGCCugcgcaugaugggCGACGACCc -3' miRNA: 3'- -CgUGGAGCUG-GUcUGGua-----------GUUGCUGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 38147 | 0.67 | 0.765358 |
Target: 5'- uCACCgcCGACaCGG-CCAUCAccaugccggcgcugACGGCCg -3' miRNA: 3'- cGUGGa-GCUG-GUCuGGUAGU--------------UGCUGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 11413 | 0.67 | 0.768483 |
Target: 5'- -uGCCUCGGCCGGcaaGCC--CGugGACa -3' miRNA: 3'- cgUGGAGCUGGUC---UGGuaGUugCUGg -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 24139 | 0.67 | 0.768483 |
Target: 5'- aCACCgUCGccACCGGcCCGcUGACGGCCg -3' miRNA: 3'- cGUGG-AGC--UGGUCuGGUaGUUGCUGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 25622 | 0.67 | 0.777775 |
Target: 5'- uGCGCCgccugggcgCGACCAacuggcaacuggcGACCAUCGccuucACGucGCCg -3' miRNA: 3'- -CGUGGa--------GCUGGU-------------CUGGUAGU-----UGC--UGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 14085 | 0.67 | 0.7788 |
Target: 5'- cGCGCUgcccgacgaGGCCaAGGCCAUCGAgucCGACg -3' miRNA: 3'- -CGUGGag-------CUGG-UCUGGUAGUU---GCUGg -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 38077 | 0.67 | 0.787949 |
Target: 5'- cGCACCggcaacgcaaCGGCCAGcaucaaggcuggcACCAUCGugGAg- -3' miRNA: 3'- -CGUGGa---------GCUGGUC-------------UGGUAGUugCUgg -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 17122 | 0.67 | 0.758017 |
Target: 5'- aGCGCCggUGGCaGGGCCGgccgC-ACGACCu -3' miRNA: 3'- -CGUGGa-GCUGgUCUGGUa---GuUGCUGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 18486 | 0.67 | 0.788957 |
Target: 5'- -gACCUCGccgggcgugcGCCuGACCAUCA-CG-CCu -3' miRNA: 3'- cgUGGAGC----------UGGuCUGGUAGUuGCuGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 23734 | 0.67 | 0.788957 |
Target: 5'- cGCugCUgcUGACCgAGGCCcgCGugGugUa -3' miRNA: 3'- -CGugGA--GCUGG-UCUGGuaGUugCugG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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