Results 21 - 40 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26606 | 3' | -52.5 | NC_005357.1 | + | 33704 | 0.66 | 0.798943 |
Target: 5'- cGCGCC-CG-CCGGGCaCAUCuuCGugUu -3' miRNA: 3'- -CGUGGaGCuGGUCUG-GUAGuuGCugG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 23063 | 0.66 | 0.808745 |
Target: 5'- -gGCCcUGGCC-GACC-UCAACGGCa -3' miRNA: 3'- cgUGGaGCUGGuCUGGuAGUUGCUGg -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 31376 | 0.66 | 0.808745 |
Target: 5'- aGCAgUUCGucGCCAaugcGGCCGagAACGGCCc -3' miRNA: 3'- -CGUgGAGC--UGGU----CUGGUagUUGCUGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 32626 | 0.66 | 0.808745 |
Target: 5'- cGCugCUUGACUGGuuCggCGugcGCGACCu -3' miRNA: 3'- -CGugGAGCUGGUCugGuaGU---UGCUGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 27574 | 0.66 | 0.798943 |
Target: 5'- gGCGCCcagCGugCGGcgcugGCCGcCAACGGCa -3' miRNA: 3'- -CGUGGa--GCugGUC-----UGGUaGUUGCUGg -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 32571 | 0.66 | 0.808745 |
Target: 5'- cGCGCCgguGCCAcGCuCAUCGACG-CCg -3' miRNA: 3'- -CGUGGagcUGGUcUG-GUAGUUGCuGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 2028 | 0.66 | 0.836939 |
Target: 5'- aGCACCggcauACCGG-CCGccUCGGCGACg -3' miRNA: 3'- -CGUGGagc--UGGUCuGGU--AGUUGCUGg -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 83 | 0.66 | 0.836939 |
Target: 5'- -uGCCUCGAagcgagccauuuCCAGAUCGUUcuGCGcGCCg -3' miRNA: 3'- cgUGGAGCU------------GGUCUGGUAGu-UGC-UGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 14654 | 0.66 | 0.807773 |
Target: 5'- cGCGCUUCGuguacguguccgaGCCGGACgAgggCAGCGAg- -3' miRNA: 3'- -CGUGGAGC-------------UGGUCUGgUa--GUUGCUgg -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 32884 | 0.66 | 0.798943 |
Target: 5'- cGCGCC-CGACUGGAaggaCAaCAagaacuGCGGCCa -3' miRNA: 3'- -CGUGGaGCUGGUCUg---GUaGU------UGCUGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 7353 | 0.66 | 0.836939 |
Target: 5'- cGCgGCCUCGACCucGGCgucguuCGUCcAGCGGCg -3' miRNA: 3'- -CG-UGGAGCUGGu-CUG------GUAG-UUGCUGg -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 4579 | 0.66 | 0.805824 |
Target: 5'- cGCugCUCGgugcGCCAGGCgAggaacugcucggccUCGGCGAUg -3' miRNA: 3'- -CGugGAGC----UGGUCUGgU--------------AGUUGCUGg -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 17912 | 0.66 | 0.818352 |
Target: 5'- cCACCUgGACguGAUCggCGugGGCg -3' miRNA: 3'- cGUGGAgCUGguCUGGuaGUugCUGg -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 37564 | 0.66 | 0.818352 |
Target: 5'- cGCGCUgggcaaCGACCuGACCgggcaaccuaugGUCAucgacuacgGCGACCu -3' miRNA: 3'- -CGUGGa-----GCUGGuCUGG------------UAGU---------UGCUGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 37487 | 0.66 | 0.808745 |
Target: 5'- -aACCUcgcagaCGugCAGACCGUC-GCGGgCa -3' miRNA: 3'- cgUGGA------GCugGUCUGGUAGuUGCUgG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 27295 | 0.67 | 0.758017 |
Target: 5'- cGCGCCUUGGCgaAGGCUucccaCGACGcCCa -3' miRNA: 3'- -CGUGGAGCUGg-UCUGGua---GUUGCuGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 39620 | 0.67 | 0.747417 |
Target: 5'- aGCACCU-GGCCcGACgaAUCGACGAa- -3' miRNA: 3'- -CGUGGAgCUGGuCUGg-UAGUUGCUgg -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 15604 | 0.67 | 0.751673 |
Target: 5'- cGCGCCaUCGGCCAGGaugcugacgguuuucCCuUCGAgGugCu -3' miRNA: 3'- -CGUGG-AGCUGGUCU---------------GGuAGUUgCugG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 15758 | 0.67 | 0.7788 |
Target: 5'- cGCACCUCGuuGCCGccaauggugcGACgCA-CGACGGCa -3' miRNA: 3'- -CGUGGAGC--UGGU----------CUG-GUaGUUGCUGg -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 1450 | 0.67 | 0.7788 |
Target: 5'- aCACCUucuUGACgGcGCgGUCGGCGGCCu -3' miRNA: 3'- cGUGGA---GCUGgUcUGgUAGUUGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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