Results 21 - 40 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26606 | 3' | -52.5 | NC_005357.1 | + | 8283 | 0.76 | 0.307764 |
Target: 5'- cGCACgcuaUCGACCAGGCCGcggaauucuUCAACGGUCa -3' miRNA: 3'- -CGUGg---AGCUGGUCUGGU---------AGUUGCUGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 8392 | 0.67 | 0.753793 |
Target: 5'- cGCGCUggcugcguagccagUCGGCCAgGGCCGUgCGcuugucuACGGCCu -3' miRNA: 3'- -CGUGG--------------AGCUGGU-CUGGUA-GU-------UGCUGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 9187 | 0.7 | 0.614104 |
Target: 5'- gGCGCCgUCGACguuGGCCugcUCGGCGGCg -3' miRNA: 3'- -CGUGG-AGCUGgu-CUGGu--AGUUGCUGg -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 9572 | 0.75 | 0.323692 |
Target: 5'- -aAUCUCGGCgCcGACCGUCuGCGGCCa -3' miRNA: 3'- cgUGGAGCUG-GuCUGGUAGuUGCUGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 9599 | 0.66 | 0.836031 |
Target: 5'- cGCACCUCGGgCGugaguucGACguUCAG-GGCCu -3' miRNA: 3'- -CGUGGAGCUgGU-------CUGguAGUUgCUGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 9765 | 0.77 | 0.2636 |
Target: 5'- uCGCCUCGAaguCCAGAUCGUUccacGCGGCCa -3' miRNA: 3'- cGUGGAGCU---GGUCUGGUAGu---UGCUGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 9827 | 0.66 | 0.834207 |
Target: 5'- gGC-CCUUGACgCGGGCCAgcuuggucacagcgUCGGCGGuguCCu -3' miRNA: 3'- -CGuGGAGCUG-GUCUGGU--------------AGUUGCU---GG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 9884 | 0.68 | 0.692818 |
Target: 5'- uGCuuCUCGGCCAGGCgCGU-GGCGAUg -3' miRNA: 3'- -CGugGAGCUGGUCUG-GUAgUUGCUGg -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 10073 | 0.79 | 0.185628 |
Target: 5'- -gGCCUCGGCgGcGACCG-CAGCGACCu -3' miRNA: 3'- cgUGGAGCUGgU-CUGGUaGUUGCUGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 10300 | 0.72 | 0.497331 |
Target: 5'- aGCACCUCGgggugccacuucGCCAGuuucgccaggccguaGCCGUCGcuGCGGCg -3' miRNA: 3'- -CGUGGAGC------------UGGUC---------------UGGUAGU--UGCUGg -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 10514 | 0.68 | 0.736694 |
Target: 5'- aGCGCCUCGaaacGCCGcaggcacucGGCC-UCGAUGGCg -3' miRNA: 3'- -CGUGGAGC----UGGU---------CUGGuAGUUGCUGg -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 10609 | 0.68 | 0.714928 |
Target: 5'- uGCACCgcauaGAaauuCCcGACCAUCGACGAa- -3' miRNA: 3'- -CGUGGag---CU----GGuCUGGUAGUUGCUgg -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 10758 | 0.69 | 0.625385 |
Target: 5'- gGCGCgCUCGACUucGGCCcgCAGuucuuCGGCCu -3' miRNA: 3'- -CGUG-GAGCUGGu-CUGGuaGUU-----GCUGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 11029 | 0.73 | 0.412309 |
Target: 5'- aCACCUgcUGcACCGGGCCGUUcuCGGCCg -3' miRNA: 3'- cGUGGA--GC-UGGUCUGGUAGuuGCUGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 11382 | 0.69 | 0.659222 |
Target: 5'- gGCACCUcgguggCGACCugauGGGCCAgggucuugagCAGCGGCg -3' miRNA: 3'- -CGUGGA------GCUGG----UCUGGUa---------GUUGCUGg -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 11413 | 0.67 | 0.768483 |
Target: 5'- -uGCCUCGGCCGGcaaGCC--CGugGACa -3' miRNA: 3'- cgUGGAGCUGGUC---UGGuaGUugCUGg -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 11928 | 0.72 | 0.503714 |
Target: 5'- cCACCUCGugCucaACC-UCGACGACUu -3' miRNA: 3'- cGUGGAGCugGuc-UGGuAGUUGCUGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 13155 | 0.72 | 0.472177 |
Target: 5'- uGCGCCUCGAUgucGGCCAguguCGGCCg -3' miRNA: 3'- -CGUGGAGCUGgu-CUGGUaguuGCUGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 14085 | 0.67 | 0.7788 |
Target: 5'- cGCGCUgcccgacgaGGCCaAGGCCAUCGAgucCGACg -3' miRNA: 3'- -CGUGGag-------CUGG-UCUGGUAGUU---GCUGg -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 14372 | 0.8 | 0.161495 |
Target: 5'- cGCugUUCGAgCAGACCGUCGcCGACg -3' miRNA: 3'- -CGugGAGCUgGUCUGGUAGUuGCUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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