miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26606 3' -52.5 NC_005357.1 + 23835 0.74 0.357364
Target:  5'- aCugCUccaagucucggaCGGCCAGGCCGUCAccgcgagcGCGGCCu -3'
miRNA:   3'- cGugGA------------GCUGGUCUGGUAGU--------UGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 31232 0.74 0.357364
Target:  5'- uGCGCggcaUUGACCGcACCAUCAccACGGCCg -3'
miRNA:   3'- -CGUGg---AGCUGGUcUGGUAGU--UGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 35565 0.74 0.366157
Target:  5'- uCugUUCGagGCCaAGACCGUCAACGGCg -3'
miRNA:   3'- cGugGAGC--UGG-UCUGGUAGUUGCUGg -5'
26606 3' -52.5 NC_005357.1 + 30541 0.74 0.366157
Target:  5'- cGCACC-CGACCAGAagaacaCCcUCAugGGCg -3'
miRNA:   3'- -CGUGGaGCUGGUCU------GGuAGUugCUGg -5'
26606 3' -52.5 NC_005357.1 + 4392 0.74 0.393418
Target:  5'- gGCGCCgUCGcGCCGGGCCuUgAGCGugCg -3'
miRNA:   3'- -CGUGG-AGC-UGGUCUGGuAgUUGCugG- -5'
26606 3' -52.5 NC_005357.1 + 23115 0.73 0.402793
Target:  5'- cGCGCCUucaucgaaggcaUGaACCAGACCca-GGCGACCa -3'
miRNA:   3'- -CGUGGA------------GC-UGGUCUGGuagUUGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 11029 0.73 0.412309
Target:  5'- aCACCUgcUGcACCGGGCCGUUcuCGGCCg -3'
miRNA:   3'- cGUGGA--GC-UGGUCUGGUAGuuGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 1672 0.73 0.421962
Target:  5'- uGCACCUCGcGCuUGGACUcgCGGCGAgCCa -3'
miRNA:   3'- -CGUGGAGC-UG-GUCUGGuaGUUGCU-GG- -5'
26606 3' -52.5 NC_005357.1 + 3805 0.73 0.421962
Target:  5'- gGCAgCaUGACCAGGCgGUCGggggcgccguuGCGACCa -3'
miRNA:   3'- -CGUgGaGCUGGUCUGgUAGU-----------UGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 7475 0.72 0.451716
Target:  5'- uGCACCaggacUCGACCAGAUCGaCcGCGcCCa -3'
miRNA:   3'- -CGUGG-----AGCUGGUCUGGUaGuUGCuGG- -5'
26606 3' -52.5 NC_005357.1 + 29631 0.72 0.461887
Target:  5'- cGCACUUCGcACCAGcCUGUCugaGGCCg -3'
miRNA:   3'- -CGUGGAGC-UGGUCuGGUAGuugCUGG- -5'
26606 3' -52.5 NC_005357.1 + 13155 0.72 0.472177
Target:  5'- uGCGCCUCGAUgucGGCCAguguCGGCCg -3'
miRNA:   3'- -CGUGGAGCUGgu-CUGGUaguuGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 29988 0.72 0.493096
Target:  5'- uGCAgCCgUCGAaCGGGCCAUCGugcuccaacugcACGGCCg -3'
miRNA:   3'- -CGU-GG-AGCUgGUCUGGUAGU------------UGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 10300 0.72 0.497331
Target:  5'- aGCACCUCGgggugccacuucGCCAGuuucgccaggccguaGCCGUCGcuGCGGCg -3'
miRNA:   3'- -CGUGGAGC------------UGGUC---------------UGGUAGU--UGCUGg -5'
26606 3' -52.5 NC_005357.1 + 5769 0.72 0.503714
Target:  5'- uGCGCCagGGCCuuGACCAUCGugucccgccaucGCGGCa -3'
miRNA:   3'- -CGUGGagCUGGu-CUGGUAGU------------UGCUGg -5'
26606 3' -52.5 NC_005357.1 + 11928 0.72 0.503714
Target:  5'- cCACCUCGugCucaACC-UCGACGACUu -3'
miRNA:   3'- cGUGGAGCugGuc-UGGuAGUUGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 18076 0.71 0.51443
Target:  5'- aGC-CCUCGACCcGACCAaCAacACGGgCa -3'
miRNA:   3'- -CGuGGAGCUGGuCUGGUaGU--UGCUgG- -5'
26606 3' -52.5 NC_005357.1 + 25955 0.71 0.51443
Target:  5'- cGCGCC-CGACCuGuCCGUCAcgcccccgaucuACGACg -3'
miRNA:   3'- -CGUGGaGCUGGuCuGGUAGU------------UGCUGg -5'
26606 3' -52.5 NC_005357.1 + 24748 0.71 0.51443
Target:  5'- cGCgGCCUCGACCcauGCUGUCGgaAUGACCu -3'
miRNA:   3'- -CG-UGGAGCUGGuc-UGGUAGU--UGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 23225 0.71 0.525238
Target:  5'- -gGCCUCGGCCucGGCCAc---CGACCg -3'
miRNA:   3'- cgUGGAGCUGGu-CUGGUaguuGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.