miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26606 3' -52.5 NC_005357.1 + 83 0.66 0.836939
Target:  5'- -uGCCUCGAagcgagccauuuCCAGAUCGUUcuGCGcGCCg -3'
miRNA:   3'- cgUGGAGCU------------GGUCUGGUAGu-UGC-UGG- -5'
26606 3' -52.5 NC_005357.1 + 1450 0.67 0.7788
Target:  5'- aCACCUucuUGACgGcGCgGUCGGCGGCCu -3'
miRNA:   3'- cGUGGA---GCUGgUcUGgUAGUUGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 1672 0.73 0.421962
Target:  5'- uGCACCUCGcGCuUGGACUcgCGGCGAgCCa -3'
miRNA:   3'- -CGUGGAGC-UG-GUCUGGuaGUUGCU-GG- -5'
26606 3' -52.5 NC_005357.1 + 2028 0.66 0.836939
Target:  5'- aGCACCggcauACCGG-CCGccUCGGCGACg -3'
miRNA:   3'- -CGUGGagc--UGGUCuGGU--AGUUGCUGg -5'
26606 3' -52.5 NC_005357.1 + 2247 0.66 0.808745
Target:  5'- cGgGCCUUGGCCGG-CaguUCGACGcgcACCa -3'
miRNA:   3'- -CgUGGAGCUGGUCuGgu-AGUUGC---UGG- -5'
26606 3' -52.5 NC_005357.1 + 3409 0.66 0.818352
Target:  5'- -uGCCUUGGCgGGGCCuuu--CGGCCc -3'
miRNA:   3'- cgUGGAGCUGgUCUGGuaguuGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 3667 0.7 0.614104
Target:  5'- aGCACCUCGuCCAcGCCuUCGuGCGAauCCa -3'
miRNA:   3'- -CGUGGAGCuGGUcUGGuAGU-UGCU--GG- -5'
26606 3' -52.5 NC_005357.1 + 3805 0.73 0.421962
Target:  5'- gGCAgCaUGACCAGGCgGUCGggggcgccguuGCGACCa -3'
miRNA:   3'- -CGUgGaGCUGGUCUGgUAGU-----------UGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 4392 0.74 0.393418
Target:  5'- gGCGCCgUCGcGCCGGGCCuUgAGCGugCg -3'
miRNA:   3'- -CGUGG-AGC-UGGUCUGGuAgUUGCugG- -5'
26606 3' -52.5 NC_005357.1 + 4434 0.66 0.817401
Target:  5'- cGCGCCagGgggaagccGCCAGcgguggcACCGUCAugcacaACGACCg -3'
miRNA:   3'- -CGUGGagC--------UGGUC-------UGGUAGU------UGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 4579 0.66 0.805824
Target:  5'- cGCugCUCGgugcGCCAGGCgAggaacugcucggccUCGGCGAUg -3'
miRNA:   3'- -CGugGAGC----UGGUCUGgU--------------AGUUGCUGg -5'
26606 3' -52.5 NC_005357.1 + 5769 0.72 0.503714
Target:  5'- uGCGCCagGGCCuuGACCAUCGugucccgccaucGCGGCa -3'
miRNA:   3'- -CGUGGagCUGGu-CUGGUAGU------------UGCUGg -5'
26606 3' -52.5 NC_005357.1 + 6470 0.69 0.636672
Target:  5'- cGCACCaCGACCAuGAggcCCAUCAGguaguCGAUCu -3'
miRNA:   3'- -CGUGGaGCUGGU-CU---GGUAGUU-----GCUGG- -5'
26606 3' -52.5 NC_005357.1 + 6584 0.79 0.185628
Target:  5'- cCGCCUCGGCCAGgggGCUgcggucuuuGUCGAUGACCa -3'
miRNA:   3'- cGUGGAGCUGGUC---UGG---------UAGUUGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 6640 0.67 0.788957
Target:  5'- cGCGCgCUUGGCCGGAgUGUCcGCGcucauggucugcGCCa -3'
miRNA:   3'- -CGUG-GAGCUGGUCUgGUAGuUGC------------UGG- -5'
26606 3' -52.5 NC_005357.1 + 7234 0.67 0.788957
Target:  5'- uGCaACUUCGGCCacuggcgcGGGCCGaugUCGcCGGCCu -3'
miRNA:   3'- -CG-UGGAGCUGG--------UCUGGU---AGUuGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 7353 0.66 0.836939
Target:  5'- cGCgGCCUCGACCucGGCgucguuCGUCcAGCGGCg -3'
miRNA:   3'- -CG-UGGAGCUGGu-CUG------GUAG-UUGCUGg -5'
26606 3' -52.5 NC_005357.1 + 7475 0.72 0.451716
Target:  5'- uGCACCaggacUCGACCAGAUCGaCcGCGcCCa -3'
miRNA:   3'- -CGUGG-----AGCUGGUCUGGUaGuUGCuGG- -5'
26606 3' -52.5 NC_005357.1 + 7672 0.68 0.735615
Target:  5'- uCACCgggGGCCAggucgucgggcuuGACC-UCGGCGGCCg -3'
miRNA:   3'- cGUGGag-CUGGU-------------CUGGuAGUUGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 7731 0.68 0.736694
Target:  5'- cGCACgCUCGgcgGCCGGcuuGCUGUUGGCGACg -3'
miRNA:   3'- -CGUG-GAGC---UGGUC---UGGUAGUUGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.