miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26606 3' -52.5 NC_005357.1 + 42001 0.7 0.591603
Target:  5'- aGCACUaaGACCAacguGGCCcgCGACGugCu -3'
miRNA:   3'- -CGUGGagCUGGU----CUGGuaGUUGCugG- -5'
26606 3' -52.5 NC_005357.1 + 41826 0.69 0.659222
Target:  5'- cGCugCU-GGCC-GACCcgCAGgCGGCCa -3'
miRNA:   3'- -CGugGAgCUGGuCUGGuaGUU-GCUGG- -5'
26606 3' -52.5 NC_005357.1 + 41810 0.68 0.681665
Target:  5'- cGCGCCgaGGCUgAGGCCAUCAucgcCGACa -3'
miRNA:   3'- -CGUGGagCUGG-UCUGGUAGUu---GCUGg -5'
26606 3' -52.5 NC_005357.1 + 41747 0.7 0.614104
Target:  5'- -gGCC-CGGCCGGcgccGCCGUaGGCGGCCu -3'
miRNA:   3'- cgUGGaGCUGGUC----UGGUAgUUGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 41109 0.71 0.536131
Target:  5'- cGCGCUugUCGGCCugguGGCCGUCGcccugggcGCGGCg -3'
miRNA:   3'- -CGUGG--AGCUGGu---CUGGUAGU--------UGCUGg -5'
26606 3' -52.5 NC_005357.1 + 40834 0.71 0.536131
Target:  5'- aCGCaCUCGACC--ACCAggaaggCGGCGGCCa -3'
miRNA:   3'- cGUG-GAGCUGGucUGGUa-----GUUGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 40670 0.69 0.625385
Target:  5'- cGCGCCa-GGCgCAGGCCggCcAUGACCg -3'
miRNA:   3'- -CGUGGagCUG-GUCUGGuaGuUGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 40483 0.79 0.196142
Target:  5'- cGCGCgCUCGACCAGAaCCcgCAgACGAUCc -3'
miRNA:   3'- -CGUG-GAGCUGGUCU-GGuaGU-UGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 40003 0.68 0.724771
Target:  5'- gGCGCCuucaaaUCGAggugguuCCAGuCCAUCcagguaggcAGCGACCg -3'
miRNA:   3'- -CGUGG------AGCU-------GGUCuGGUAG---------UUGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 39620 0.67 0.747417
Target:  5'- aGCACCU-GGCCcGACgaAUCGACGAa- -3'
miRNA:   3'- -CGUGGAgCUGGuCUGg-UAGUUGCUgg -5'
26606 3' -52.5 NC_005357.1 + 38264 0.69 0.636672
Target:  5'- aCACCUCGACCAcGGCgCgcaagGUgGGCGGCUu -3'
miRNA:   3'- cGUGGAGCUGGU-CUG-G-----UAgUUGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 38234 0.67 0.758017
Target:  5'- cGUGCUcgCGGCCAacaugcccGCCAUCGagGCGGCCg -3'
miRNA:   3'- -CGUGGa-GCUGGUc-------UGGUAGU--UGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 38147 0.67 0.765358
Target:  5'- uCACCgcCGACaCGG-CCAUCAccaugccggcgcugACGGCCg -3'
miRNA:   3'- cGUGGa-GCUG-GUCuGGUAGU--------------UGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 38077 0.67 0.787949
Target:  5'- cGCACCggcaacgcaaCGGCCAGcaucaaggcuggcACCAUCGugGAg- -3'
miRNA:   3'- -CGUGGa---------GCUGGUC-------------UGGUAGUugCUgg -5'
26606 3' -52.5 NC_005357.1 + 37871 0.68 0.714928
Target:  5'- aGCGCCUCGGCgAcuucGGCC-UCAAgcccaaGACCu -3'
miRNA:   3'- -CGUGGAGCUGgU----CUGGuAGUUg-----CUGG- -5'
26606 3' -52.5 NC_005357.1 + 37564 0.66 0.818352
Target:  5'- cGCGCUgggcaaCGACCuGACCgggcaaccuaugGUCAucgacuacgGCGACCu -3'
miRNA:   3'- -CGUGGa-----GCUGGuCUGG------------UAGU---------UGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 37487 0.66 0.808745
Target:  5'- -aACCUcgcagaCGugCAGACCGUC-GCGGgCa -3'
miRNA:   3'- cgUGGA------GCugGUCUGGUAGuUGCUgG- -5'
26606 3' -52.5 NC_005357.1 + 37132 0.66 0.808745
Target:  5'- -gGCCUCGaccuGCCAGACaugcagcaAUCGACG-CUg -3'
miRNA:   3'- cgUGGAGC----UGGUCUGg-------UAGUUGCuGG- -5'
26606 3' -52.5 NC_005357.1 + 36947 1.15 0.000622
Target:  5'- gGCACCUCGACCAGACCAUCAACGACCg -3'
miRNA:   3'- -CGUGGAGCUGGUCUGGUAGUUGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 36806 0.68 0.72586
Target:  5'- cCACCUCG-CCAa--CAUCGACG-CCg -3'
miRNA:   3'- cGUGGAGCuGGUcugGUAGUUGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.