Results 1 - 20 of 157 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26606 | 3' | -52.5 | NC_005357.1 | + | 34821 | 0.66 | 0.818352 |
Target: 5'- gGCGCUgcgCGACCAcGugcuguccACCGUCGccgACGACUu -3' miRNA: 3'- -CGUGGa--GCUGGU-C--------UGGUAGU---UGCUGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 4579 | 0.66 | 0.805824 |
Target: 5'- cGCugCUCGgugcGCCAGGCgAggaacugcucggccUCGGCGAUg -3' miRNA: 3'- -CGugGAGC----UGGUCUGgU--------------AGUUGCUGg -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 37132 | 0.66 | 0.808745 |
Target: 5'- -gGCCUCGaccuGCCAGACaugcagcaAUCGACG-CUg -3' miRNA: 3'- cgUGGAGC----UGGUCUGg-------UAGUUGCuGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 33337 | 0.66 | 0.827754 |
Target: 5'- cGCGgCaCGGCCAccgcuGGCUAUCGcggcACGGCCa -3' miRNA: 3'- -CGUgGaGCUGGU-----CUGGUAGU----UGCUGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 27368 | 0.66 | 0.827754 |
Target: 5'- aGCA-CUCGuCCAG-CCAUU--CGGCCa -3' miRNA: 3'- -CGUgGAGCuGGUCuGGUAGuuGCUGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 32884 | 0.66 | 0.798943 |
Target: 5'- cGCGCC-CGACUGGAaggaCAaCAagaacuGCGGCCa -3' miRNA: 3'- -CGUGGaGCUGGUCUg---GUaGU------UGCUGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 35652 | 0.66 | 0.818352 |
Target: 5'- gGCGCUga-ACCAGGCCAUCGAgcagguCG-CCa -3' miRNA: 3'- -CGUGGagcUGGUCUGGUAGUU------GCuGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 4434 | 0.66 | 0.817401 |
Target: 5'- cGCGCCagGgggaagccGCCAGcgguggcACCGUCAugcacaACGACCg -3' miRNA: 3'- -CGUGGagC--------UGGUC-------UGGUAGU------UGCUGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 3409 | 0.66 | 0.818352 |
Target: 5'- -uGCCUUGGCgGGGCCuuu--CGGCCc -3' miRNA: 3'- cgUGGAGCUGgUCUGGuaguuGCUGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 33241 | 0.66 | 0.827754 |
Target: 5'- cGCGgCaCGGCCAccgcuGGCUAUCGcggcACGGCCa -3' miRNA: 3'- -CGUgGaGCUGGU-----CUGGUAGU----UGCUGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 2247 | 0.66 | 0.808745 |
Target: 5'- cGgGCCUUGGCCGG-CaguUCGACGcgcACCa -3' miRNA: 3'- -CgUGGAGCUGGUCuGgu-AGUUGC---UGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 33385 | 0.66 | 0.827754 |
Target: 5'- cGCGgCaCGGCCAccgcuGGCUAUCGcggcACGGCCa -3' miRNA: 3'- -CGUgGaGCUGGU-----CUGGUAGU----UGCUGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 33289 | 0.66 | 0.827754 |
Target: 5'- cGCGgCaCGGCCAccgcuGGCUAUCGcggcACGGCCa -3' miRNA: 3'- -CGUgGaGCUGGU-----CUGGUAGU----UGCUGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 9599 | 0.66 | 0.836031 |
Target: 5'- cGCACCUCGGgCGugaguucGACguUCAG-GGCCu -3' miRNA: 3'- -CGUGGAGCUgGU-------CUGguAGUUgCUGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 27574 | 0.66 | 0.798943 |
Target: 5'- gGCGCCcagCGugCGGcgcugGCCGcCAACGGCa -3' miRNA: 3'- -CGUGGa--GCugGUC-----UGGUaGUUGCUGg -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 31376 | 0.66 | 0.808745 |
Target: 5'- aGCAgUUCGucGCCAaugcGGCCGagAACGGCCc -3' miRNA: 3'- -CGUgGAGC--UGGU----CUGGUagUUGCUGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 31879 | 0.66 | 0.836939 |
Target: 5'- uGCAagacccCCUC-ACCAGuuccGCCAUCGA-GGCCg -3' miRNA: 3'- -CGU------GGAGcUGGUC----UGGUAGUUgCUGG- -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 14654 | 0.66 | 0.807773 |
Target: 5'- cGCGCUUCGuguacguguccgaGCCGGACgAgggCAGCGAg- -3' miRNA: 3'- -CGUGGAGC-------------UGGUCUGgUa--GUUGCUgg -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 7353 | 0.66 | 0.836939 |
Target: 5'- cGCgGCCUCGACCucGGCgucguuCGUCcAGCGGCg -3' miRNA: 3'- -CG-UGGAGCUGGu-CUG------GUAG-UUGCUGg -5' |
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26606 | 3' | -52.5 | NC_005357.1 | + | 33868 | 0.66 | 0.818352 |
Target: 5'- cGCGCCugUCGcuGCCc-GCCAUCGgcGCGGCUg -3' miRNA: 3'- -CGUGG--AGC--UGGucUGGUAGU--UGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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