Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26607 | 5' | -58.3 | NC_005357.1 | + | 14847 | 0.66 | 0.448269 |
Target: 5'- --gCCGuugGC-GGCCAGCGCCGCa- -3' miRNA: 3'- auaGGCcaaCGuCCGGUCGUGGUGgu -5' |
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26607 | 5' | -58.3 | NC_005357.1 | + | 17125 | 0.66 | 0.418834 |
Target: 5'- --gCCGGUgGCAgGGCCGgccGCACgACCu -3' miRNA: 3'- auaGGCCAaCGU-CCGGU---CGUGgUGGu -5' |
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26607 | 5' | -58.3 | NC_005357.1 | + | 4041 | 0.66 | 0.414998 |
Target: 5'- --gCCGGccgcggcgagcgGCAGGCCAGCGgC-CCAg -3' miRNA: 3'- auaGGCCaa----------CGUCCGGUCGUgGuGGU- -5' |
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26607 | 5' | -58.3 | NC_005357.1 | + | 23949 | 0.66 | 0.409286 |
Target: 5'- cAUCCGGUgGaCGaaucGGCCGaCGCCGCCGg -3' miRNA: 3'- aUAGGCCAaC-GU----CCGGUcGUGGUGGU- -5' |
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26607 | 5' | -58.3 | NC_005357.1 | + | 10304 | 0.66 | 0.409286 |
Target: 5'- gAUUCGGggGCgucgAGGUCGGCAgCgGCCAg -3' miRNA: 3'- aUAGGCCaaCG----UCCGGUCGU-GgUGGU- -5' |
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26607 | 5' | -58.3 | NC_005357.1 | + | 41146 | 0.66 | 0.399875 |
Target: 5'- ---gCGG-UGUGGGCgGGCAUCACCu -3' miRNA: 3'- auagGCCaACGUCCGgUCGUGGUGGu -5' |
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26607 | 5' | -58.3 | NC_005357.1 | + | 17682 | 0.66 | 0.399875 |
Target: 5'- --gCUGGgcGUAGGCgaAGCGCCACUc -3' miRNA: 3'- auaGGCCaaCGUCCGg-UCGUGGUGGu -5' |
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26607 | 5' | -58.3 | NC_005357.1 | + | 25332 | 0.67 | 0.35841 |
Target: 5'- gUcgCCGGgauUGUccAGGCCGGCcaguucgcauagccgGCCACCGg -3' miRNA: 3'- -AuaGGCCa--ACG--UCCGGUCG---------------UGGUGGU- -5' |
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26607 | 5' | -58.3 | NC_005357.1 | + | 30146 | 0.67 | 0.35495 |
Target: 5'- --gCCGGcacGCuGGGCCAGCAacCCGCCc -3' miRNA: 3'- auaGGCCaa-CG-UCCGGUCGU--GGUGGu -5' |
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26607 | 5' | -58.3 | NC_005357.1 | + | 2823 | 0.67 | 0.35495 |
Target: 5'- --aCCGGcugaccaccuaUUGaggaaAGGCCAGC-CCGCCAa -3' miRNA: 3'- auaGGCC-----------AACg----UCCGGUCGuGGUGGU- -5' |
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26607 | 5' | -58.3 | NC_005357.1 | + | 29692 | 0.67 | 0.35495 |
Target: 5'- cGUCUGGgcGCGGcacCCAGCACCaacggGCCGg -3' miRNA: 3'- aUAGGCCaaCGUCc--GGUCGUGG-----UGGU- -5' |
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26607 | 5' | -58.3 | NC_005357.1 | + | 25778 | 0.67 | 0.35495 |
Target: 5'- aGUCCGcucccucGUcGGCCGGCACCugCAc -3' miRNA: 3'- aUAGGCcaa----CGuCCGGUCGUGGugGU- -5' |
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26607 | 5' | -58.3 | NC_005357.1 | + | 12287 | 0.67 | 0.345555 |
Target: 5'- aUGUCCGacgcggUGCAGGCCggcggcguguucuGGCGCgGCCu -3' miRNA: 3'- -AUAGGCca----ACGUCCGG-------------UCGUGgUGGu -5' |
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26607 | 5' | -58.3 | NC_005357.1 | + | 3741 | 0.68 | 0.329752 |
Target: 5'- --gCCGGUgguggGCAcGUCGGUGCCGCCGc -3' miRNA: 3'- auaGGCCAa----CGUcCGGUCGUGGUGGU- -5' |
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26607 | 5' | -58.3 | NC_005357.1 | + | 19491 | 0.68 | 0.329752 |
Target: 5'- --gCCGGUggGCAGGCC-GCugCgaACCGu -3' miRNA: 3'- auaGGCCAa-CGUCCGGuCGugG--UGGU- -5' |
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26607 | 5' | -58.3 | NC_005357.1 | + | 40673 | 0.68 | 0.298248 |
Target: 5'- --gCCaGgcGCAGGCCGGCcaugACCGCCc -3' miRNA: 3'- auaGGcCaaCGUCCGGUCG----UGGUGGu -5' |
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26607 | 5' | -58.3 | NC_005357.1 | + | 14594 | 0.69 | 0.276186 |
Target: 5'- ---gCGGc-GC-GGCCGGCGCCACCGc -3' miRNA: 3'- auagGCCaaCGuCCGGUCGUGGUGGU- -5' |
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26607 | 5' | -58.3 | NC_005357.1 | + | 19619 | 0.69 | 0.269127 |
Target: 5'- cGUCCGGggucaUGCGGGCCGcGaCAUCgGCCAg -3' miRNA: 3'- aUAGGCCa----ACGUCCGGU-C-GUGG-UGGU- -5' |
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26607 | 5' | -58.3 | NC_005357.1 | + | 5112 | 0.69 | 0.255447 |
Target: 5'- cGUCCGG-UGC-GGCUGGCGCCGuuGa -3' miRNA: 3'- aUAGGCCaACGuCCGGUCGUGGUggU- -5' |
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26607 | 5' | -58.3 | NC_005357.1 | + | 23737 | 0.7 | 0.248824 |
Target: 5'- --cUCGGUggcgcGCAGcagcgccauGCCGGCGCCACCGg -3' miRNA: 3'- auaGGCCAa----CGUC---------CGGUCGUGGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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