miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26607 5' -58.3 NC_005357.1 + 14847 0.66 0.448269
Target:  5'- --gCCGuugGC-GGCCAGCGCCGCa- -3'
miRNA:   3'- auaGGCcaaCGuCCGGUCGUGGUGgu -5'
26607 5' -58.3 NC_005357.1 + 17125 0.66 0.418834
Target:  5'- --gCCGGUgGCAgGGCCGgccGCACgACCu -3'
miRNA:   3'- auaGGCCAaCGU-CCGGU---CGUGgUGGu -5'
26607 5' -58.3 NC_005357.1 + 4041 0.66 0.414998
Target:  5'- --gCCGGccgcggcgagcgGCAGGCCAGCGgC-CCAg -3'
miRNA:   3'- auaGGCCaa----------CGUCCGGUCGUgGuGGU- -5'
26607 5' -58.3 NC_005357.1 + 23949 0.66 0.409286
Target:  5'- cAUCCGGUgGaCGaaucGGCCGaCGCCGCCGg -3'
miRNA:   3'- aUAGGCCAaC-GU----CCGGUcGUGGUGGU- -5'
26607 5' -58.3 NC_005357.1 + 10304 0.66 0.409286
Target:  5'- gAUUCGGggGCgucgAGGUCGGCAgCgGCCAg -3'
miRNA:   3'- aUAGGCCaaCG----UCCGGUCGU-GgUGGU- -5'
26607 5' -58.3 NC_005357.1 + 41146 0.66 0.399875
Target:  5'- ---gCGG-UGUGGGCgGGCAUCACCu -3'
miRNA:   3'- auagGCCaACGUCCGgUCGUGGUGGu -5'
26607 5' -58.3 NC_005357.1 + 17682 0.66 0.399875
Target:  5'- --gCUGGgcGUAGGCgaAGCGCCACUc -3'
miRNA:   3'- auaGGCCaaCGUCCGg-UCGUGGUGGu -5'
26607 5' -58.3 NC_005357.1 + 25332 0.67 0.35841
Target:  5'- gUcgCCGGgauUGUccAGGCCGGCcaguucgcauagccgGCCACCGg -3'
miRNA:   3'- -AuaGGCCa--ACG--UCCGGUCG---------------UGGUGGU- -5'
26607 5' -58.3 NC_005357.1 + 30146 0.67 0.35495
Target:  5'- --gCCGGcacGCuGGGCCAGCAacCCGCCc -3'
miRNA:   3'- auaGGCCaa-CG-UCCGGUCGU--GGUGGu -5'
26607 5' -58.3 NC_005357.1 + 2823 0.67 0.35495
Target:  5'- --aCCGGcugaccaccuaUUGaggaaAGGCCAGC-CCGCCAa -3'
miRNA:   3'- auaGGCC-----------AACg----UCCGGUCGuGGUGGU- -5'
26607 5' -58.3 NC_005357.1 + 29692 0.67 0.35495
Target:  5'- cGUCUGGgcGCGGcacCCAGCACCaacggGCCGg -3'
miRNA:   3'- aUAGGCCaaCGUCc--GGUCGUGG-----UGGU- -5'
26607 5' -58.3 NC_005357.1 + 25778 0.67 0.35495
Target:  5'- aGUCCGcucccucGUcGGCCGGCACCugCAc -3'
miRNA:   3'- aUAGGCcaa----CGuCCGGUCGUGGugGU- -5'
26607 5' -58.3 NC_005357.1 + 12287 0.67 0.345555
Target:  5'- aUGUCCGacgcggUGCAGGCCggcggcguguucuGGCGCgGCCu -3'
miRNA:   3'- -AUAGGCca----ACGUCCGG-------------UCGUGgUGGu -5'
26607 5' -58.3 NC_005357.1 + 3741 0.68 0.329752
Target:  5'- --gCCGGUgguggGCAcGUCGGUGCCGCCGc -3'
miRNA:   3'- auaGGCCAa----CGUcCGGUCGUGGUGGU- -5'
26607 5' -58.3 NC_005357.1 + 19491 0.68 0.329752
Target:  5'- --gCCGGUggGCAGGCC-GCugCgaACCGu -3'
miRNA:   3'- auaGGCCAa-CGUCCGGuCGugG--UGGU- -5'
26607 5' -58.3 NC_005357.1 + 40673 0.68 0.298248
Target:  5'- --gCCaGgcGCAGGCCGGCcaugACCGCCc -3'
miRNA:   3'- auaGGcCaaCGUCCGGUCG----UGGUGGu -5'
26607 5' -58.3 NC_005357.1 + 14594 0.69 0.276186
Target:  5'- ---gCGGc-GC-GGCCGGCGCCACCGc -3'
miRNA:   3'- auagGCCaaCGuCCGGUCGUGGUGGU- -5'
26607 5' -58.3 NC_005357.1 + 19619 0.69 0.269127
Target:  5'- cGUCCGGggucaUGCGGGCCGcGaCAUCgGCCAg -3'
miRNA:   3'- aUAGGCCa----ACGUCCGGU-C-GUGG-UGGU- -5'
26607 5' -58.3 NC_005357.1 + 5112 0.69 0.255447
Target:  5'- cGUCCGG-UGC-GGCUGGCGCCGuuGa -3'
miRNA:   3'- aUAGGCCaACGuCCGGUCGUGGUggU- -5'
26607 5' -58.3 NC_005357.1 + 23737 0.7 0.248824
Target:  5'- --cUCGGUggcgcGCAGcagcgccauGCCGGCGCCACCGg -3'
miRNA:   3'- auaGGCCAa----CGUC---------CGGUCGUGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.