Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26607 | 5' | -58.3 | NC_005357.1 | + | 365 | 0.7 | 0.223741 |
Target: 5'- cAUCCGGgugUGCuuGGCCugccgauugAGCGCgGCCAg -3' miRNA: 3'- aUAGGCCa--ACGu-CCGG---------UCGUGgUGGU- -5' |
|||||||
26607 | 5' | -58.3 | NC_005357.1 | + | 15387 | 0.71 | 0.206366 |
Target: 5'- cGUCCGcgUGCGGGCCGGCGaagaUGCCGg -3' miRNA: 3'- aUAGGCcaACGUCCGGUCGUg---GUGGU- -5' |
|||||||
26607 | 5' | -58.3 | NC_005357.1 | + | 16043 | 0.72 | 0.165657 |
Target: 5'- --gCCaGUUGUAGGCCAGUucgcgcacgugGCCGCCGc -3' miRNA: 3'- auaGGcCAACGUCCGGUCG-----------UGGUGGU- -5' |
|||||||
26607 | 5' | -58.3 | NC_005357.1 | + | 41736 | 0.73 | 0.156671 |
Target: 5'- gUAUCuUGGgcgGCccGGCCGGCGCCGCCGu -3' miRNA: 3'- -AUAG-GCCaa-CGu-CCGGUCGUGGUGGU- -5' |
|||||||
26607 | 5' | -58.3 | NC_005357.1 | + | 9888 | 0.75 | 0.111155 |
Target: 5'- aUcgCCGGcgGCAgcauccuGGCCGGCAUCACCAg -3' miRNA: 3'- -AuaGGCCaaCGU-------CCGGUCGUGGUGGU- -5' |
|||||||
26607 | 5' | -58.3 | NC_005357.1 | + | 37220 | 1.07 | 0.000395 |
Target: 5'- gUAUCCGGUUGCAGGCCAGCACCACCAg -3' miRNA: 3'- -AUAGGCCAACGUCCGGUCGUGGUGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home