miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26608 3' -54.2 NC_005357.1 + 28102 0.69 0.504763
Target:  5'- gGCccgGCAGUUCAgccaagGCGcGCGCCAGUUc -3'
miRNA:   3'- gUGcaaCGUCAAGU------UGC-CGCGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 12294 0.74 0.270621
Target:  5'- aCGCGgUGCAGgcCGGCGGCGUguucuggcgCGGCCu -3'
miRNA:   3'- -GUGCaACGUCaaGUUGCCGCG---------GUCGG- -5'
26608 3' -54.2 NC_005357.1 + 22495 0.66 0.69459
Target:  5'- cCACGgccgacaaGgAGUUCGGCGGCGacaAGCUg -3'
miRNA:   3'- -GUGCaa------CgUCAAGUUGCCGCgg-UCGG- -5'
26608 3' -54.2 NC_005357.1 + 8113 0.66 0.660893
Target:  5'- gCACGUgcucgGCcauUUCGGCGGUGacuucCCAGCCc -3'
miRNA:   3'- -GUGCAa----CGuc-AAGUUGCCGC-----GGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 25490 0.69 0.537323
Target:  5'- gCACGcUGC---UgGACGGCGCCGuGCCc -3'
miRNA:   3'- -GUGCaACGucaAgUUGCCGCGGU-CGG- -5'
26608 3' -54.2 NC_005357.1 + 1851 0.74 0.270621
Target:  5'- gAUGUUGCcgccgucuugcaGGUUCAGCccguggccGGCGCUGGCCg -3'
miRNA:   3'- gUGCAACG------------UCAAGUUG--------CCGCGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 41366 0.67 0.648458
Target:  5'- gCGCGUUacuggacGcCGGUUC-GCGGCgacaugcugccGCCGGCCg -3'
miRNA:   3'- -GUGCAA-------C-GUCAAGuUGCCG-----------CGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 21679 0.78 0.143944
Target:  5'- gCGCGgcGCAGcgCcucuACGGCGCCAGCa -3'
miRNA:   3'- -GUGCaaCGUCaaGu---UGCCGCGGUCGg -5'
26608 3' -54.2 NC_005357.1 + 35116 0.79 0.132123
Target:  5'- uGCGUUcGCAGaccaUCGACGGCGCCAuCCg -3'
miRNA:   3'- gUGCAA-CGUCa---AGUUGCCGCGGUcGG- -5'
26608 3' -54.2 NC_005357.1 + 33232 0.71 0.393964
Target:  5'- cCGCGccgccgaGCAGgccaacgUCGACGGCGCCAaguugucgcuGCCg -3'
miRNA:   3'- -GUGCaa-----CGUCa------AGUUGCCGCGGU----------CGG- -5'
26608 3' -54.2 NC_005357.1 + 38136 0.69 0.537323
Target:  5'- gCugG-UGCAGUUCAccgccgacACGGCcaucaccauGCCGGCg -3'
miRNA:   3'- -GugCaACGUCAAGU--------UGCCG---------CGGUCGg -5'
26608 3' -54.2 NC_005357.1 + 36837 0.66 0.716755
Target:  5'- aACGagGCGGacaUCGacACGGUGgCGGCCa -3'
miRNA:   3'- gUGCaaCGUCa--AGU--UGCCGCgGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 25985 0.67 0.62694
Target:  5'- cUACGacGCcguGUUCAACGcCGCCGGCg -3'
miRNA:   3'- -GUGCaaCGu--CAAGUUGCcGCGGUCGg -5'
26608 3' -54.2 NC_005357.1 + 40071 0.66 0.660893
Target:  5'- cCACG-UGCAGgcCGaauuGCGGCGCaCGcgcGCCa -3'
miRNA:   3'- -GUGCaACGUCaaGU----UGCCGCG-GU---CGG- -5'
26608 3' -54.2 NC_005357.1 + 10096 0.66 0.683406
Target:  5'- cCugGgcgGCGGUUgu-CGGgaCGCCGGCCu -3'
miRNA:   3'- -GugCaa-CGUCAAguuGCC--GCGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 20541 0.66 0.705711
Target:  5'- aAUGgaaGCcuuGggCGACGuGCGCCAGCUa -3'
miRNA:   3'- gUGCaa-CGu--CaaGUUGC-CGCGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 9692 0.71 0.41294
Target:  5'- cUugGUggggGCGG-UC-AUGGCGUCAGCCc -3'
miRNA:   3'- -GugCAa---CGUCaAGuUGCCGCGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 6197 0.74 0.277783
Target:  5'- aGCGuUUGCAGgu-GACGGCGCgCGGCUc -3'
miRNA:   3'- gUGC-AACGUCaagUUGCCGCG-GUCGG- -5'
26608 3' -54.2 NC_005357.1 + 5072 0.71 0.383771
Target:  5'- cCGCGgcagguuUUGCGGUUgGAacaGGCgGCCGGCCc -3'
miRNA:   3'- -GUGC-------AACGUCAAgUUg--CCG-CGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 2230 0.68 0.581781
Target:  5'- cCACGc-GCAGca-GGCGGCGCgUGGCCg -3'
miRNA:   3'- -GUGCaaCGUCaagUUGCCGCG-GUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.