Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26608 | 5' | -62.1 | NC_005357.1 | + | 37341 | 1.08 | 0.000175 |
Target: 5'- cUGGGCCGGCCGCCUGUUCCAACCGCAa -3' miRNA: 3'- -ACCCGGCCGGCGGACAAGGUUGGCGU- -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 36043 | 0.78 | 0.041403 |
Target: 5'- cGGGCCGGCCgGCCUGcgCCugauuGCCGaCGu -3' miRNA: 3'- aCCCGGCCGG-CGGACaaGGu----UGGC-GU- -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 891 | 0.75 | 0.06709 |
Target: 5'- aGGGCC-GCCGCgUUGUUCCAgaaguugACCGCGc -3' miRNA: 3'- aCCCGGcCGGCG-GACAAGGU-------UGGCGU- -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 30602 | 0.73 | 0.094317 |
Target: 5'- cGcGGCgCGGCCgGUCUGUUCCAGuCCGUc -3' miRNA: 3'- aC-CCG-GCCGG-CGGACAAGGUU-GGCGu -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 14995 | 0.72 | 0.102539 |
Target: 5'- aGGGCCugcGGCCGCCgggcgcgGUgcgCCAGgCGCGc -3' miRNA: 3'- aCCCGG---CCGGCGGa------CAa--GGUUgGCGU- -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 7025 | 0.71 | 0.121047 |
Target: 5'- aUGGGCguuUGuGCCGCCUGUUgCAGCaggCGCAu -3' miRNA: 3'- -ACCCG---GC-CGGCGGACAAgGUUG---GCGU- -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 18021 | 0.71 | 0.131426 |
Target: 5'- cGGGCCGGCUGCgCUucUUCAACuugCGCAg -3' miRNA: 3'- aCCCGGCCGGCG-GAcaAGGUUG---GCGU- -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 19745 | 0.71 | 0.135064 |
Target: 5'- uUGGGCUGGuuGCCguUGUUgCCGGCCa-- -3' miRNA: 3'- -ACCCGGCCggCGG--ACAA-GGUUGGcgu -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 8796 | 0.7 | 0.148138 |
Target: 5'- aUGGGUCGGCCGCgCcggucaguaccgaucUGcugggucgggCCAGCCGCAa -3' miRNA: 3'- -ACCCGGCCGGCG-G---------------ACaa--------GGUUGGCGU- -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 37274 | 0.7 | 0.156357 |
Target: 5'- aGGGCgugagcagcgaCGGCCGCCUgcgcggcacguugcaGUUcaacggcgCCAGCCGCAc -3' miRNA: 3'- aCCCG-----------GCCGGCGGA---------------CAA--------GGUUGGCGU- -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 23574 | 0.7 | 0.167659 |
Target: 5'- gUGGGCaugGGCCGCCcgGccUUCUAcauGCCGCGc -3' miRNA: 3'- -ACCCGg--CCGGCGGa-C--AAGGU---UGGCGU- -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 1712 | 0.69 | 0.172197 |
Target: 5'- gUGGGCCGGCgUGCCggcgagGgcgUCCAAguccUCGCGg -3' miRNA: 3'- -ACCCGGCCG-GCGGa-----Ca--AGGUU----GGCGU- -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 5523 | 0.69 | 0.181603 |
Target: 5'- aGGacacGCCGGCCGCCcagGUUCC-GCC-CAg -3' miRNA: 3'- aCC----CGGCCGGCGGa--CAAGGuUGGcGU- -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 9489 | 0.69 | 0.186475 |
Target: 5'- cGGGCgucauGCCaGCCUGUUCC-GCCGUg -3' miRNA: 3'- aCCCGgc---CGG-CGGACAAGGuUGGCGu -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 21745 | 0.69 | 0.191461 |
Target: 5'- uUGGGCgCGGCCGCg---UCCAcauaggacagGCCGCc -3' miRNA: 3'- -ACCCG-GCCGGCGgacaAGGU----------UGGCGu -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 12303 | 0.68 | 0.201786 |
Target: 5'- -aGGCCGGCgGCgUGUUCUGG-CGCGg -3' miRNA: 3'- acCCGGCCGgCGgACAAGGUUgGCGU- -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 17134 | 0.68 | 0.212591 |
Target: 5'- aGGGCCGGCCGCa-----CGACCuCAa -3' miRNA: 3'- aCCCGGCCGGCGgacaagGUUGGcGU- -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 1762 | 0.68 | 0.212591 |
Target: 5'- -uGGCCGGCCugcGCCUGgcgcgUCgGGCCGa- -3' miRNA: 3'- acCCGGCCGG---CGGACa----AGgUUGGCgu -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 4173 | 0.68 | 0.223313 |
Target: 5'- cUGGuaGCCGGCCGCCucgauggcgggcaUGUU--GGCCGCGa -3' miRNA: 3'- -ACC--CGGCCGGCGG-------------ACAAggUUGGCGU- -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 8036 | 0.68 | 0.22389 |
Target: 5'- aGGGCCGccguccuuGCCGCCg--UCCAugaCGCGc -3' miRNA: 3'- aCCCGGC--------CGGCGGacaAGGUug-GCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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