Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26608 | 5' | -62.1 | NC_005357.1 | + | 22797 | 0.66 | 0.313142 |
Target: 5'- cGGGCCGGUCaGCaugGUgCCGgacuggcccgacuucGCCGCGc -3' miRNA: 3'- aCCCGGCCGG-CGga-CAaGGU---------------UGGCGU- -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 16937 | 0.67 | 0.260214 |
Target: 5'- aGGGCaCGG-CGCCg--UCCAgcagcguGCCGCGu -3' miRNA: 3'- aCCCG-GCCgGCGGacaAGGU-------UGGCGU- -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 19495 | 0.67 | 0.260869 |
Target: 5'- gUGGGCaGGCCGCUg---CgAACCGUg -3' miRNA: 3'- -ACCCGgCCGGCGGacaaGgUUGGCGu -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 14136 | 0.66 | 0.281155 |
Target: 5'- -cGGCCaGCgGCUUGccUUCCGGCCGUu -3' miRNA: 3'- acCCGGcCGgCGGAC--AAGGUUGGCGu -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 14923 | 0.66 | 0.302674 |
Target: 5'- -uGGCCGGCCuCaaGUgCCGACUGCGc -3' miRNA: 3'- acCCGGCCGGcGgaCAaGGUUGGCGU- -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 34208 | 0.66 | 0.302674 |
Target: 5'- aGGGCaCGGCCGCgcacGaaCUGGCCGCc -3' miRNA: 3'- aCCCG-GCCGGCGga--CaaGGUUGGCGu -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 24508 | 0.66 | 0.302674 |
Target: 5'- gGGGCUGGCgcccaCGCCgaucacgUCCAgguggaugACCGCGu -3' miRNA: 3'- aCCCGGCCG-----GCGGaca----AGGU--------UGGCGU- -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 1192 | 0.66 | 0.310123 |
Target: 5'- gGGGUCGGCCgGgUUGUUggaaUAACCGCc -3' miRNA: 3'- aCCCGGCCGG-CgGACAAg---GUUGGCGu -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 11600 | 0.66 | 0.310123 |
Target: 5'- -cGGCUGGCCGCCgggcagcaGUgCCAGCggaaGCAu -3' miRNA: 3'- acCCGGCCGGCGGa-------CAaGGUUGg---CGU- -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 38378 | 0.67 | 0.254377 |
Target: 5'- cUGGGCCGcUgGCCUGccgCUcGCCGCGg -3' miRNA: 3'- -ACCCGGCcGgCGGACaa-GGuUGGCGU- -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 4258 | 0.67 | 0.254377 |
Target: 5'- cGGuGCCGGCCGUCaGcgCCGgcauggugaugGCCGUg -3' miRNA: 3'- aCC-CGGCCGGCGGaCaaGGU-----------UGGCGu -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 28666 | 0.67 | 0.241791 |
Target: 5'- cGGuGCCGGCgGCCUcg-CCAG-CGCGg -3' miRNA: 3'- aCC-CGGCCGgCGGAcaaGGUUgGCGU- -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 19745 | 0.71 | 0.135064 |
Target: 5'- uUGGGCUGGuuGCCguUGUUgCCGGCCa-- -3' miRNA: 3'- -ACCCGGCCggCGG--ACAA-GGUUGGcgu -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 8796 | 0.7 | 0.148138 |
Target: 5'- aUGGGUCGGCCGCgCcggucaguaccgaucUGcugggucgggCCAGCCGCAa -3' miRNA: 3'- -ACCCGGCCGGCG-G---------------ACaa--------GGUUGGCGU- -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 37274 | 0.7 | 0.156357 |
Target: 5'- aGGGCgugagcagcgaCGGCCGCCUgcgcggcacguugcaGUUcaacggcgCCAGCCGCAc -3' miRNA: 3'- aCCCG-----------GCCGGCGGA---------------CAA--------GGUUGGCGU- -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 1712 | 0.69 | 0.172197 |
Target: 5'- gUGGGCCGGCgUGCCggcgagGgcgUCCAAguccUCGCGg -3' miRNA: 3'- -ACCCGGCCG-GCGGa-----Ca--AGGUU----GGCGU- -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 5523 | 0.69 | 0.181603 |
Target: 5'- aGGacacGCCGGCCGCCcagGUUCC-GCC-CAg -3' miRNA: 3'- aCC----CGGCCGGCGGa--CAAGGuUGGcGU- -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 9489 | 0.69 | 0.186475 |
Target: 5'- cGGGCgucauGCCaGCCUGUUCC-GCCGUg -3' miRNA: 3'- aCCCGgc---CGG-CGGACAAGGuUGGCGu -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 21745 | 0.69 | 0.191461 |
Target: 5'- uUGGGCgCGGCCGCg---UCCAcauaggacagGCCGCc -3' miRNA: 3'- -ACCCG-GCCGGCGgacaAGGU----------UGGCGu -5' |
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26608 | 5' | -62.1 | NC_005357.1 | + | 8036 | 0.68 | 0.22389 |
Target: 5'- aGGGCCGccguccuuGCCGCCg--UCCAugaCGCGc -3' miRNA: 3'- aCCCGGC--------CGGCGGacaAGGUug-GCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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