miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26608 5' -62.1 NC_005357.1 + 36043 0.78 0.041403
Target:  5'- cGGGCCGGCCgGCCUGcgCCugauuGCCGaCGu -3'
miRNA:   3'- aCCCGGCCGG-CGGACaaGGu----UGGC-GU- -5'
26608 5' -62.1 NC_005357.1 + 16816 0.68 0.22389
Target:  5'- cUGGcGaCCGcGCCGCCgugGUUgCCAcugccuggGCCGCAg -3'
miRNA:   3'- -ACC-C-GGC-CGGCGGa--CAA-GGU--------UGGCGU- -5'
26608 5' -62.1 NC_005357.1 + 17134 0.68 0.212591
Target:  5'- aGGGCCGGCCGCa-----CGACCuCAa -3'
miRNA:   3'- aCCCGGCCGGCGgacaagGUUGGcGU- -5'
26608 5' -62.1 NC_005357.1 + 12303 0.68 0.201786
Target:  5'- -aGGCCGGCgGCgUGUUCUGG-CGCGg -3'
miRNA:   3'- acCCGGCCGgCGgACAAGGUUgGCGU- -5'
26608 5' -62.1 NC_005357.1 + 18021 0.71 0.131426
Target:  5'- cGGGCCGGCUGCgCUucUUCAACuugCGCAg -3'
miRNA:   3'- aCCCGGCCGGCG-GAcaAGGUUG---GCGU- -5'
26608 5' -62.1 NC_005357.1 + 7025 0.71 0.121047
Target:  5'- aUGGGCguuUGuGCCGCCUGUUgCAGCaggCGCAu -3'
miRNA:   3'- -ACCCG---GC-CGGCGGACAAgGUUG---GCGU- -5'
26608 5' -62.1 NC_005357.1 + 36074 0.66 0.295363
Target:  5'- gUGGGCCGGuUCGCCac--CCAGaCGCAc -3'
miRNA:   3'- -ACCCGGCC-GGCGGacaaGGUUgGCGU- -5'
26608 5' -62.1 NC_005357.1 + 4173 0.68 0.223313
Target:  5'- cUGGuaGCCGGCCGCCucgauggcgggcaUGUU--GGCCGCGa -3'
miRNA:   3'- -ACC--CGGCCGGCGG-------------ACAAggUUGGCGU- -5'
26608 5' -62.1 NC_005357.1 + 23574 0.7 0.167659
Target:  5'- gUGGGCaugGGCCGCCcgGccUUCUAcauGCCGCGc -3'
miRNA:   3'- -ACCCGg--CCGGCGGa-C--AAGGU---UGGCGU- -5'
26608 5' -62.1 NC_005357.1 + 14995 0.72 0.102539
Target:  5'- aGGGCCugcGGCCGCCgggcgcgGUgcgCCAGgCGCGc -3'
miRNA:   3'- aCCCGG---CCGGCGGa------CAa--GGUUgGCGU- -5'
26608 5' -62.1 NC_005357.1 + 891 0.75 0.06709
Target:  5'- aGGGCC-GCCGCgUUGUUCCAgaaguugACCGCGc -3'
miRNA:   3'- aCCCGGcCGGCG-GACAAGGU-------UGGCGU- -5'
26608 5' -62.1 NC_005357.1 + 5264 0.66 0.310123
Target:  5'- gGGGUCGGCaauGCgUcGUUCCAgcgucgauuGCUGCAu -3'
miRNA:   3'- aCCCGGCCGg--CGgA-CAAGGU---------UGGCGU- -5'
26608 5' -62.1 NC_005357.1 + 30602 0.73 0.094317
Target:  5'- cGcGGCgCGGCCgGUCUGUUCCAGuCCGUc -3'
miRNA:   3'- aC-CCG-GCCGG-CGGACAAGGUU-GGCGu -5'
26608 5' -62.1 NC_005357.1 + 1762 0.68 0.212591
Target:  5'- -uGGCCGGCCugcGCCUGgcgcgUCgGGCCGa- -3'
miRNA:   3'- acCCGGCCGG---CGGACa----AGgUUGGCgu -5'
26608 5' -62.1 NC_005357.1 + 7168 0.66 0.317711
Target:  5'- aGGGCCGGgCGCUUGUcggaUUCGGggGCGa -3'
miRNA:   3'- aCCCGGCCgGCGGACA----AGGUUggCGU- -5'
26608 5' -62.1 NC_005357.1 + 31524 0.66 0.28819
Target:  5'- cGGGCaGGUCGCCa-UUCCGguggaggaauacGCCGCGc -3'
miRNA:   3'- aCCCGgCCGGCGGacAAGGU------------UGGCGU- -5'
26608 5' -62.1 NC_005357.1 + 14136 0.66 0.281155
Target:  5'- -cGGCCaGCgGCUUGccUUCCGGCCGUu -3'
miRNA:   3'- acCCGGcCGgCGGAC--AAGGUUGGCGu -5'
26608 5' -62.1 NC_005357.1 + 19495 0.67 0.260869
Target:  5'- gUGGGCaGGCCGCUg---CgAACCGUg -3'
miRNA:   3'- -ACCCGgCCGGCGGacaaGgUUGGCGu -5'
26608 5' -62.1 NC_005357.1 + 16937 0.67 0.260214
Target:  5'- aGGGCaCGG-CGCCg--UCCAgcagcguGCCGCGu -3'
miRNA:   3'- aCCCG-GCCgGCGGacaAGGU-------UGGCGU- -5'
26608 5' -62.1 NC_005357.1 + 38378 0.67 0.254377
Target:  5'- cUGGGCCGcUgGCCUGccgCUcGCCGCGg -3'
miRNA:   3'- -ACCCGGCcGgCGGACaa-GGuUGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.