miRNA display CGI


Results 1 - 20 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26609 3' -55.3 NC_005357.1 + 41957 0.66 0.663747
Target:  5'- aGGCAUcCGACCgcGACaGCGcccgcaagcUGGCCGc -3'
miRNA:   3'- -CCGUA-GCUGGaaCUG-CGCu--------ACCGGCu -5'
26609 3' -55.3 NC_005357.1 + 41913 0.66 0.652648
Target:  5'- aGGUuUCGGCCa----GCGAUGGCCc- -3'
miRNA:   3'- -CCGuAGCUGGaacugCGCUACCGGcu -5'
26609 3' -55.3 NC_005357.1 + 41709 0.69 0.489175
Target:  5'- aGGCGcUCGA-CUUGGC-CG-UGGCCGAc -3'
miRNA:   3'- -CCGU-AGCUgGAACUGcGCuACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 41411 0.66 0.638192
Target:  5'- aGCAUggccgaguauuuccCGGCCagUGGCGCGGgcagcgGGCUGAc -3'
miRNA:   3'- cCGUA--------------GCUGGa-ACUGCGCUa-----CCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 40657 0.68 0.520751
Target:  5'- cGUAUCGGCCc-GACGCGccaggcgcaGGCCGGc -3'
miRNA:   3'- cCGUAGCUGGaaCUGCGCua-------CCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 40144 0.69 0.499605
Target:  5'- aGCAUCGACCgcgcggcacUGuACGCGAUGaUCGAc -3'
miRNA:   3'- cCGUAGCUGGa--------AC-UGCGCUACcGGCU- -5'
26609 3' -55.3 NC_005357.1 + 38987 0.66 0.652648
Target:  5'- cGGCGUCuguGACCaccugauucUUGAguaGCGG-GGCCGAa -3'
miRNA:   3'- -CCGUAG---CUGG---------AACUg--CGCUaCCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 38393 0.74 0.231256
Target:  5'- cGGCugcgcUCGACCcgcgcggcaUGACGCuGGUGGCCGGc -3'
miRNA:   3'- -CCGu----AGCUGGa--------ACUGCG-CUACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 37773 1.11 0.000566
Target:  5'- cGGCAUCGACCUUGACGCGAUGGCCGAc -3'
miRNA:   3'- -CCGUAGCUGGAACUGCGCUACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 37513 0.68 0.520751
Target:  5'- gGGCAUCGcuGCC--GACGUuuccaccGUGGCCGAa -3'
miRNA:   3'- -CCGUAGC--UGGaaCUGCGc------UACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 37119 0.74 0.23744
Target:  5'- uGGCcggCGACCUggaaaauaucGACGCcGUGGCCGAc -3'
miRNA:   3'- -CCGua-GCUGGAa---------CUGCGcUACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 36968 0.71 0.347352
Target:  5'- ----aCGACCgcGGCGUGAUGGUCGAu -3'
miRNA:   3'- ccguaGCUGGaaCUGCGCUACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 35183 0.69 0.448535
Target:  5'- cGGCGacaUCGGCCc--GCGCcaGUGGCCGAa -3'
miRNA:   3'- -CCGU---AGCUGGaacUGCGc-UACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 34946 0.66 0.671498
Target:  5'- gGGCgcgGUCGAUCUggucgaguccUGgugcaaggccauucGCGCGAaGGCCGAa -3'
miRNA:   3'- -CCG---UAGCUGGA----------AC--------------UGCGCUaCCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 34367 0.7 0.438668
Target:  5'- aGGCAgCGACCUgGGCGCGcgucAUGGaCGGc -3'
miRNA:   3'- -CCGUaGCUGGAaCUGCGC----UACCgGCU- -5'
26609 3' -55.3 NC_005357.1 + 33967 0.66 0.663747
Target:  5'- cGGCAUCGcaggccACCUcGACGCcGAcaucGcGCCGAu -3'
miRNA:   3'- -CCGUAGC------UGGAaCUGCG-CUa---C-CGGCU- -5'
26609 3' -55.3 NC_005357.1 + 31290 0.66 0.674815
Target:  5'- uGGCAgcgaagccuggCGACC---GCGUGGUGGCCc- -3'
miRNA:   3'- -CCGUa----------GCUGGaacUGCGCUACCGGcu -5'
26609 3' -55.3 NC_005357.1 + 28544 0.66 0.685843
Target:  5'- cGGCA-CGACCUUG-CGgcCGccGGCCa- -3'
miRNA:   3'- -CCGUaGCUGGAACuGC--GCuaCCGGcu -5'
26609 3' -55.3 NC_005357.1 + 28318 0.67 0.597071
Target:  5'- cGGCGcgcUCGGCgUcgGACuCGAUGGCCu- -3'
miRNA:   3'- -CCGU---AGCUGgAa-CUGcGCUACCGGcu -5'
26609 3' -55.3 NC_005357.1 + 27613 0.72 0.32274
Target:  5'- uGGuCGUCGcCCUUGACGaug-GGCCGGu -3'
miRNA:   3'- -CC-GUAGCuGGAACUGCgcuaCCGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.