miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26609 3' -55.3 NC_005357.1 + 13439 0.67 0.62039
Target:  5'- cGGCAggcccgccagcuuggCGGCCUcgGGCGCGGUG-UCGGg -3'
miRNA:   3'- -CCGUa--------------GCUGGAa-CUGCGCUACcGGCU- -5'
26609 3' -55.3 NC_005357.1 + 13867 0.69 0.499605
Target:  5'- aGGUuUCGGCCUUuAUGCGAUcgacaGCCGAa -3'
miRNA:   3'- -CCGuAGCUGGAAcUGCGCUAc----CGGCU- -5'
26609 3' -55.3 NC_005357.1 + 23314 0.69 0.499605
Target:  5'- cGGCAcUGGCCgggaUGACGUGGUaGCCGc -3'
miRNA:   3'- -CCGUaGCUGGa---ACUGCGCUAcCGGCu -5'
26609 3' -55.3 NC_005357.1 + 12008 0.68 0.510132
Target:  5'- -aCGUCGGCCagcaGCGCGGccgUGGCCGGc -3'
miRNA:   3'- ccGUAGCUGGaac-UGCGCU---ACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 16262 0.68 0.510132
Target:  5'- uGGCGUUGGCCUc-GCGCGc-GGCCa- -3'
miRNA:   3'- -CCGUAGCUGGAacUGCGCuaCCGGcu -5'
26609 3' -55.3 NC_005357.1 + 40657 0.68 0.520751
Target:  5'- cGUAUCGGCCc-GACGCGccaggcgcaGGCCGGc -3'
miRNA:   3'- cCGUAGCUGGaaCUGCGCua-------CCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 18374 0.67 0.597071
Target:  5'- cGGCgagGUUGGCCUugccgaUGGCGCcGGUGGCgGc -3'
miRNA:   3'- -CCG---UAGCUGGA------ACUGCG-CUACCGgCu -5'
26609 3' -55.3 NC_005357.1 + 28318 0.67 0.597071
Target:  5'- cGGCGcgcUCGGCgUcgGACuCGAUGGCCu- -3'
miRNA:   3'- -CCGU---AGCUGgAa-CUGcGCUACCGGcu -5'
26609 3' -55.3 NC_005357.1 + 25908 0.67 0.608164
Target:  5'- aGGCGgguuUCGACUUgcagcuUGCGGUGGCCc- -3'
miRNA:   3'- -CCGU----AGCUGGAacu---GCGCUACCGGcu -5'
26609 3' -55.3 NC_005357.1 + 41709 0.69 0.489175
Target:  5'- aGGCGcUCGA-CUUGGC-CG-UGGCCGAc -3'
miRNA:   3'- -CCGU-AGCUgGAACUGcGCuACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 26320 0.69 0.478848
Target:  5'- aGGCA-CGGUCUUGACGCGcaccgcgaacUGGCCGc -3'
miRNA:   3'- -CCGUaGCUGGAACUGCGCu---------ACCGGCu -5'
26609 3' -55.3 NC_005357.1 + 35183 0.69 0.448535
Target:  5'- cGGCGacaUCGGCCc--GCGCcaGUGGCCGAa -3'
miRNA:   3'- -CCGU---AGCUGGaacUGCGc-UACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 5625 0.83 0.065198
Target:  5'- cGGCGUCGAUgUUGGCGaGGUGGCCGu -3'
miRNA:   3'- -CCGUAGCUGgAACUGCgCUACCGGCu -5'
26609 3' -55.3 NC_005357.1 + 15720 0.75 0.213515
Target:  5'- gGGCAUCGAac-UGGCGCGA-GGCCa- -3'
miRNA:   3'- -CCGUAGCUggaACUGCGCUaCCGGcu -5'
26609 3' -55.3 NC_005357.1 + 27613 0.72 0.32274
Target:  5'- uGGuCGUCGcCCUUGACGaug-GGCCGGu -3'
miRNA:   3'- -CC-GUAGCuGGAACUGCgcuaCCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 36968 0.71 0.347352
Target:  5'- ----aCGACCgcGGCGUGAUGGUCGAu -3'
miRNA:   3'- ccguaGCUGGaaCUGCGCUACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 13168 0.71 0.347352
Target:  5'- cGGCcaguGUCGGCCgcgcugGGCGCccuUGGCCGGc -3'
miRNA:   3'- -CCG----UAGCUGGaa----CUGCGcu-ACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 23573 0.71 0.373278
Target:  5'- cGGCAggugCGGgCggggGGCGaCGAUGGCCGu -3'
miRNA:   3'- -CCGUa---GCUgGaa--CUGC-GCUACCGGCu -5'
26609 3' -55.3 NC_005357.1 + 15440 0.71 0.391277
Target:  5'- aGCuuGUUGAuguUCUUGACGCGcccuUGGCCGAa -3'
miRNA:   3'- cCG--UAGCU---GGAACUGCGCu---ACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 19058 0.7 0.407015
Target:  5'- cGGCGUCGAUCagcgUGuccucgccgaggucACGCGAUugcaGGCCGGc -3'
miRNA:   3'- -CCGUAGCUGGa---AC--------------UGCGCUA----CCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.