miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26609 3' -55.3 NC_005357.1 + 21092 0.79 0.122923
Target:  5'- uGGCA---ACCUgGGCGCGGUGGCCGGc -3'
miRNA:   3'- -CCGUagcUGGAaCUGCGCUACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 7324 0.7 0.438668
Target:  5'- uGC-UCGACCUUgaGACGC-AUGGCCu- -3'
miRNA:   3'- cCGuAGCUGGAA--CUGCGcUACCGGcu -5'
26609 3' -55.3 NC_005357.1 + 7684 0.69 0.458523
Target:  5'- aGGuCGUCGGgCUUGACcuCGgcGGCCGGc -3'
miRNA:   3'- -CC-GUAGCUgGAACUGc-GCuaCCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 14198 0.66 0.685843
Target:  5'- cGCAgucCGACCc--GCGCGuggucgucggcGUGGCCGAc -3'
miRNA:   3'- cCGUa--GCUGGaacUGCGC-----------UACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 6740 0.75 0.218711
Target:  5'- cGGCGUCGGCCUUGGCGCcccacuuuuccuuGGcgaccugcucgaUGGCCu- -3'
miRNA:   3'- -CCGUAGCUGGAACUGCG-------------CU------------ACCGGcu -5'
26609 3' -55.3 NC_005357.1 + 38393 0.74 0.231256
Target:  5'- cGGCugcgcUCGACCcgcgcggcaUGACGCuGGUGGCCGGc -3'
miRNA:   3'- -CCGu----AGCUGGa--------ACUGCG-CUACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 1753 0.74 0.243762
Target:  5'- gGGCGgucauggcCGGCCUgcgccUGGCGCGucgGGCCGAu -3'
miRNA:   3'- -CCGUa-------GCUGGA-----ACUGCGCua-CCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 14996 0.73 0.299452
Target:  5'- gGGCcugCGGCCgccgGGCGCGGUGcGCCa- -3'
miRNA:   3'- -CCGua-GCUGGaa--CUGCGCUAC-CGGcu -5'
26609 3' -55.3 NC_005357.1 + 13399 0.71 0.382207
Target:  5'- gGGUAUCGACCUggccgaaGCGCGGcgccUGGUCGc -3'
miRNA:   3'- -CCGUAGCUGGAac-----UGCGCU----ACCGGCu -5'
26609 3' -55.3 NC_005357.1 + 34367 0.7 0.438668
Target:  5'- aGGCAgCGACCUgGGCGCGcgucAUGGaCGGc -3'
miRNA:   3'- -CCGUaGCUGGAaCUGCGC----UACCgGCU- -5'
26609 3' -55.3 NC_005357.1 + 13780 0.7 0.409833
Target:  5'- cGGCAcCGAUCUggcacUGcGCGCGGaacUGGCCGGc -3'
miRNA:   3'- -CCGUaGCUGGA-----AC-UGCGCU---ACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 27603 0.72 0.339001
Target:  5'- cGGCAUCGACCUgggcgaaGGCaGCGcc-GCCGAg -3'
miRNA:   3'- -CCGUAGCUGGAa------CUG-CGCuacCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 7448 0.78 0.137595
Target:  5'- cGGCuUCGGCCUUcGCGCGAaUGGCCu- -3'
miRNA:   3'- -CCGuAGCUGGAAcUGCGCU-ACCGGcu -5'
26609 3' -55.3 NC_005357.1 + 13863 0.7 0.428926
Target:  5'- uGGCcgaCGugCgcGcCGCGAUGGCCGGc -3'
miRNA:   3'- -CCGua-GCugGaaCuGCGCUACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 26876 0.76 0.171848
Target:  5'- cGGCGccaUUGACCUgGACGUGGaGGCCGGc -3'
miRNA:   3'- -CCGU---AGCUGGAaCUGCGCUaCCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 13733 0.72 0.32274
Target:  5'- aGCAUCGACCUugugaacgacgUGGCGCGccGcGCUGGc -3'
miRNA:   3'- cCGUAGCUGGA-----------ACUGCGCuaC-CGGCU- -5'
26609 3' -55.3 NC_005357.1 + 26603 0.7 0.428926
Target:  5'- cGGCGuguUCGAguCCU--GCGCGGuggUGGCCGAg -3'
miRNA:   3'- -CCGU---AGCU--GGAacUGCGCU---ACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 12857 0.69 0.448535
Target:  5'- gGGCG-CGGCCgaccUGACGCGAUaccCCGAg -3'
miRNA:   3'- -CCGUaGCUGGa---ACUGCGCUAcc-GGCU- -5'
26609 3' -55.3 NC_005357.1 + 9818 0.76 0.181529
Target:  5'- cGGCGUCGcggcCCUUGACGCG--GGCCa- -3'
miRNA:   3'- -CCGUAGCu---GGAACUGCGCuaCCGGcu -5'
26609 3' -55.3 NC_005357.1 + 37119 0.74 0.23744
Target:  5'- uGGCcggCGACCUggaaaauaucGACGCcGUGGCCGAc -3'
miRNA:   3'- -CCGua-GCUGGAa---------CUGCGcUACCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.