miRNA display CGI


Results 41 - 60 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26609 3' -55.3 NC_005357.1 + 7324 0.7 0.438668
Target:  5'- uGC-UCGACCUUgaGACGC-AUGGCCu- -3'
miRNA:   3'- cCGuAGCUGGAA--CUGCGcUACCGGcu -5'
26609 3' -55.3 NC_005357.1 + 13863 0.7 0.428926
Target:  5'- uGGCcgaCGugCgcGcCGCGAUGGCCGGc -3'
miRNA:   3'- -CCGua-GCugGaaCuGCGCUACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 26603 0.7 0.428926
Target:  5'- cGGCGuguUCGAguCCU--GCGCGGuggUGGCCGAg -3'
miRNA:   3'- -CCGU---AGCU--GGAacUGCGCU---ACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 13780 0.7 0.409833
Target:  5'- cGGCAcCGAUCUggcacUGcGCGCGGaacUGGCCGGc -3'
miRNA:   3'- -CCGUaGCUGGA-----AC-UGCGCU---ACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 19058 0.7 0.407015
Target:  5'- cGGCGUCGAUCagcgUGuccucgccgaggucACGCGAUugcaGGCCGGc -3'
miRNA:   3'- -CCGUAGCUGGa---AC--------------UGCGCUA----CCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 7234 0.7 0.400486
Target:  5'- uGCAacuUCGGCCacUGGCGCG--GGCCGAu -3'
miRNA:   3'- cCGU---AGCUGGa-ACUGCGCuaCCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 15440 0.71 0.391277
Target:  5'- aGCuuGUUGAuguUCUUGACGCGcccuUGGCCGAa -3'
miRNA:   3'- cCG--UAGCU---GGAACUGCGCu---ACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 13399 0.71 0.382207
Target:  5'- gGGUAUCGACCUggccgaaGCGCGGcgccUGGUCGc -3'
miRNA:   3'- -CCGUAGCUGGAac-----UGCGCU----ACCGGCu -5'
26609 3' -55.3 NC_005357.1 + 23573 0.71 0.373278
Target:  5'- cGGCAggugCGGgCggggGGCGaCGAUGGCCGu -3'
miRNA:   3'- -CCGUa---GCUgGaa--CUGC-GCUACCGGCu -5'
26609 3' -55.3 NC_005357.1 + 36968 0.71 0.347352
Target:  5'- ----aCGACCgcGGCGUGAUGGUCGAu -3'
miRNA:   3'- ccguaGCUGGaaCUGCGCUACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 13168 0.71 0.347352
Target:  5'- cGGCcaguGUCGGCCgcgcugGGCGCccuUGGCCGGc -3'
miRNA:   3'- -CCG----UAGCUGGaa----CUGCGcu-ACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 27603 0.72 0.339001
Target:  5'- cGGCAUCGACCUgggcgaaGGCaGCGcc-GCCGAg -3'
miRNA:   3'- -CCGUAGCUGGAa------CUG-CGCuacCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 27613 0.72 0.32274
Target:  5'- uGGuCGUCGcCCUUGACGaug-GGCCGGu -3'
miRNA:   3'- -CC-GUAGCuGGAACUGCgcuaCCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 13733 0.72 0.32274
Target:  5'- aGCAUCGACCUugugaacgacgUGGCGCGccGcGCUGGc -3'
miRNA:   3'- cCGUAGCUGGA-----------ACUGCGCuaC-CGGCU- -5'
26609 3' -55.3 NC_005357.1 + 14996 0.73 0.299452
Target:  5'- gGGCcugCGGCCgccgGGCGCGGUGcGCCa- -3'
miRNA:   3'- -CCGua-GCUGGaa--CUGCGCUAC-CGGcu -5'
26609 3' -55.3 NC_005357.1 + 1753 0.74 0.243762
Target:  5'- gGGCGgucauggcCGGCCUgcgccUGGCGCGucgGGCCGAu -3'
miRNA:   3'- -CCGUa-------GCUGGA-----ACUGCGCua-CCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 37119 0.74 0.23744
Target:  5'- uGGCcggCGACCUggaaaauaucGACGCcGUGGCCGAc -3'
miRNA:   3'- -CCGua-GCUGGAa---------CUGCGcUACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 38393 0.74 0.231256
Target:  5'- cGGCugcgcUCGACCcgcgcggcaUGACGCuGGUGGCCGGc -3'
miRNA:   3'- -CCGu----AGCUGGa--------ACUGCG-CUACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 6740 0.75 0.218711
Target:  5'- cGGCGUCGGCCUUGGCGCcccacuuuuccuuGGcgaccugcucgaUGGCCu- -3'
miRNA:   3'- -CCGUAGCUGGAACUGCG-------------CU------------ACCGGcu -5'
26609 3' -55.3 NC_005357.1 + 15720 0.75 0.213515
Target:  5'- gGGCAUCGAac-UGGCGCGA-GGCCa- -3'
miRNA:   3'- -CCGUAGCUggaACUGCGCUaCCGGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.