miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26609 3' -55.3 NC_005357.1 + 18374 0.67 0.597071
Target:  5'- cGGCgagGUUGGCCUugccgaUGGCGCcGGUGGCgGc -3'
miRNA:   3'- -CCG---UAGCUGGA------ACUGCG-CUACCGgCu -5'
26609 3' -55.3 NC_005357.1 + 23647 0.67 0.586009
Target:  5'- aGGUggCGGCCUcGACGCugacGAUGGaaGAa -3'
miRNA:   3'- -CCGuaGCUGGAaCUGCG----CUACCggCU- -5'
26609 3' -55.3 NC_005357.1 + 5458 0.67 0.586009
Target:  5'- cGGUAUCGACCaucacGcCGCGGucguugauggucUGGUCGAg -3'
miRNA:   3'- -CCGUAGCUGGaa---CuGCGCU------------ACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 23434 0.67 0.586009
Target:  5'- gGGaCAUCGGCCUgacccuGCGCGAcUGGCg-- -3'
miRNA:   3'- -CC-GUAGCUGGAac----UGCGCU-ACCGgcu -5'
26609 3' -55.3 NC_005357.1 + 8002 0.67 0.564011
Target:  5'- cGGCGUCGGacgugcCCUUGGCGCcagcuucGCCGGu -3'
miRNA:   3'- -CCGUAGCU------GGAACUGCGcuac---CGGCU- -5'
26609 3' -55.3 NC_005357.1 + 6954 0.68 0.542238
Target:  5'- gGGUAUUGACgCUUGACccgcuCGGUGGCUu- -3'
miRNA:   3'- -CCGUAGCUG-GAACUGc----GCUACCGGcu -5'
26609 3' -55.3 NC_005357.1 + 37513 0.68 0.520751
Target:  5'- gGGCAUCGcuGCC--GACGUuuccaccGUGGCCGAa -3'
miRNA:   3'- -CCGUAGC--UGGaaCUGCGc------UACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 40657 0.68 0.520751
Target:  5'- cGUAUCGGCCc-GACGCGccaggcgcaGGCCGGc -3'
miRNA:   3'- cCGUAGCUGGaaCUGCGCua-------CCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 16262 0.68 0.510132
Target:  5'- uGGCGUUGGCCUc-GCGCGc-GGCCa- -3'
miRNA:   3'- -CCGUAGCUGGAacUGCGCuaCCGGcu -5'
26609 3' -55.3 NC_005357.1 + 12008 0.68 0.510132
Target:  5'- -aCGUCGGCCagcaGCGCGGccgUGGCCGGc -3'
miRNA:   3'- ccGUAGCUGGaac-UGCGCU---ACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 40144 0.69 0.499605
Target:  5'- aGCAUCGACCgcgcggcacUGuACGCGAUGaUCGAc -3'
miRNA:   3'- cCGUAGCUGGa--------AC-UGCGCUACcGGCU- -5'
26609 3' -55.3 NC_005357.1 + 18670 0.69 0.499605
Target:  5'- cGCAUCGGCCcgGugGCGccGGCaUGGc -3'
miRNA:   3'- cCGUAGCUGGaaCugCGCuaCCG-GCU- -5'
26609 3' -55.3 NC_005357.1 + 23314 0.69 0.499605
Target:  5'- cGGCAcUGGCCgggaUGACGUGGUaGCCGc -3'
miRNA:   3'- -CCGUaGCUGGa---ACUGCGCUAcCGGCu -5'
26609 3' -55.3 NC_005357.1 + 13867 0.69 0.499605
Target:  5'- aGGUuUCGGCCUUuAUGCGAUcgacaGCCGAa -3'
miRNA:   3'- -CCGuAGCUGGAAcUGCGCUAc----CGGCU- -5'
26609 3' -55.3 NC_005357.1 + 41709 0.69 0.489175
Target:  5'- aGGCGcUCGA-CUUGGC-CG-UGGCCGAc -3'
miRNA:   3'- -CCGU-AGCUgGAACUGcGCuACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 26320 0.69 0.478848
Target:  5'- aGGCA-CGGUCUUGACGCGcaccgcgaacUGGCCGc -3'
miRNA:   3'- -CCGUaGCUGGAACUGCGCu---------ACCGGCu -5'
26609 3' -55.3 NC_005357.1 + 7684 0.69 0.458523
Target:  5'- aGGuCGUCGGgCUUGACcuCGgcGGCCGGc -3'
miRNA:   3'- -CC-GUAGCUgGAACUGc-GCuaCCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 12857 0.69 0.448535
Target:  5'- gGGCG-CGGCCgaccUGACGCGAUaccCCGAg -3'
miRNA:   3'- -CCGUaGCUGGa---ACUGCGCUAcc-GGCU- -5'
26609 3' -55.3 NC_005357.1 + 35183 0.69 0.448535
Target:  5'- cGGCGacaUCGGCCc--GCGCcaGUGGCCGAa -3'
miRNA:   3'- -CCGU---AGCUGGaacUGCGc-UACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 34367 0.7 0.438668
Target:  5'- aGGCAgCGACCUgGGCGCGcgucAUGGaCGGc -3'
miRNA:   3'- -CCGUaGCUGGAaCUGCGC----UACCgGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.