miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26609 5' -57.5 NC_005357.1 + 37808 1.09 0.000427
Target:  5'- gGCCCAGCAUCCCCGCCGACAUCAUCGc -3'
miRNA:   3'- -CGGGUCGUAGGGGCGGCUGUAGUAGC- -5'
26609 5' -57.5 NC_005357.1 + 9890 0.77 0.114636
Target:  5'- cGCCggcggCAGCAUCCUgGCCGGCAUCAcCa -3'
miRNA:   3'- -CGG-----GUCGUAGGGgCGGCUGUAGUaGc -5'
26609 5' -57.5 NC_005357.1 + 16858 0.75 0.143305
Target:  5'- aCCgCGGCGuacaacUCCgaCGCCGACAUCAUCGg -3'
miRNA:   3'- cGG-GUCGU------AGGg-GCGGCUGUAGUAGC- -5'
26609 5' -57.5 NC_005357.1 + 27033 0.74 0.159981
Target:  5'- cGUCCGGCAUCUUCGCCGGCccgCAcgCGg -3'
miRNA:   3'- -CGGGUCGUAGGGGCGGCUGua-GUa-GC- -5'
26609 5' -57.5 NC_005357.1 + 12291 0.74 0.178388
Target:  5'- gGCCCAGCGUgCCgGCuaCGGCggCGUCGa -3'
miRNA:   3'- -CGGGUCGUAgGGgCG--GCUGuaGUAGC- -5'
26609 5' -57.5 NC_005357.1 + 35245 0.74 0.180329
Target:  5'- aGCCCAGCGUcgcCCCCGaauCCGACAagcgcccggcccuggUCAUCc -3'
miRNA:   3'- -CGGGUCGUA---GGGGC---GGCUGU---------------AGUAGc -5'
26609 5' -57.5 NC_005357.1 + 14191 0.73 0.204022
Target:  5'- aGCCUGGCGcaguccgaCCCGCgCGugGUCGUCGg -3'
miRNA:   3'- -CGGGUCGUag------GGGCG-GCugUAGUAGC- -5'
26609 5' -57.5 NC_005357.1 + 5914 0.73 0.209518
Target:  5'- cGUCCGGCAUCUuuucgCCGCUGGCggCAUCc -3'
miRNA:   3'- -CGGGUCGUAGG-----GGCGGCUGuaGUAGc -5'
26609 5' -57.5 NC_005357.1 + 5105 0.73 0.21514
Target:  5'- gGCCCAGCGUCCggugCgGCUGGCGcCGUUGa -3'
miRNA:   3'- -CGGGUCGUAGG----GgCGGCUGUaGUAGC- -5'
26609 5' -57.5 NC_005357.1 + 18997 0.73 0.21514
Target:  5'- aUCC-GCAUCCCgGCCGGCGUCGc-- -3'
miRNA:   3'- cGGGuCGUAGGGgCGGCUGUAGUagc -5'
26609 5' -57.5 NC_005357.1 + 17430 0.73 0.21514
Target:  5'- cGCCCuugAGCAguggCCCCGCCaGCAUCGa-- -3'
miRNA:   3'- -CGGG---UCGUa---GGGGCGGcUGUAGUagc -5'
26609 5' -57.5 NC_005357.1 + 24764 0.72 0.238937
Target:  5'- cGCCCAGC----CCGCCGACGcCAUCa -3'
miRNA:   3'- -CGGGUCGuaggGGCGGCUGUaGUAGc -5'
26609 5' -57.5 NC_005357.1 + 31158 0.72 0.24522
Target:  5'- gGCCgAGCGUCCCagCGCCGcagcGCAaacccUCAUCGc -3'
miRNA:   3'- -CGGgUCGUAGGG--GCGGC----UGU-----AGUAGC- -5'
26609 5' -57.5 NC_005357.1 + 6396 0.72 0.25164
Target:  5'- cGCCgCGGCGcCCUCGgUGAUGUCGUCGa -3'
miRNA:   3'- -CGG-GUCGUaGGGGCgGCUGUAGUAGC- -5'
26609 5' -57.5 NC_005357.1 + 818 0.71 0.278709
Target:  5'- cGCCCAGC--CCuuGCCGAa--CGUCGg -3'
miRNA:   3'- -CGGGUCGuaGGggCGGCUguaGUAGC- -5'
26609 5' -57.5 NC_005357.1 + 25936 0.7 0.293091
Target:  5'- gGCCCAGCAugUCCCgCGCUuGACcuuguagccGUCGUCc -3'
miRNA:   3'- -CGGGUCGU--AGGG-GCGG-CUG---------UAGUAGc -5'
26609 5' -57.5 NC_005357.1 + 189 0.7 0.293091
Target:  5'- -gCCGGCGucaUCCCCGCCaucaGCAUCAUgGu -3'
miRNA:   3'- cgGGUCGU---AGGGGCGGc---UGUAGUAgC- -5'
26609 5' -57.5 NC_005357.1 + 27285 0.7 0.323577
Target:  5'- cGCCCugggcGCAUCCgCCGCCaGCAUgggGUCGg -3'
miRNA:   3'- -CGGGu----CGUAGG-GGCGGcUGUAg--UAGC- -5'
26609 5' -57.5 NC_005357.1 + 19066 0.7 0.323577
Target:  5'- -aUCAGCguGUCCUCGCCGAgGUCAcgCGa -3'
miRNA:   3'- cgGGUCG--UAGGGGCGGCUgUAGUa-GC- -5'
26609 5' -57.5 NC_005357.1 + 4304 0.69 0.339683
Target:  5'- cGCCCAuGUAggacagCuuGCCGGCGUCAUCc -3'
miRNA:   3'- -CGGGU-CGUag----GggCGGCUGUAGUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.