miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26609 5' -57.5 NC_005357.1 + 28863 0.66 0.508877
Target:  5'- uCCCAGCG-CCgCGCC-ACGUCcUCGc -3'
miRNA:   3'- cGGGUCGUaGGgGCGGcUGUAGuAGC- -5'
26609 5' -57.5 NC_005357.1 + 7768 0.68 0.428643
Target:  5'- aGCaCCGGCGcgaUCUgCGCCGGCGUCcacccuUCGc -3'
miRNA:   3'- -CG-GGUCGU---AGGgGCGGCUGUAGu-----AGC- -5'
26609 5' -57.5 NC_005357.1 + 24594 0.67 0.457892
Target:  5'- cGUCCGGCguGUCCuuGCCGGgGUaggucagcggcaCGUCGa -3'
miRNA:   3'- -CGGGUCG--UAGGggCGGCUgUA------------GUAGC- -5'
26609 5' -57.5 NC_005357.1 + 41625 0.67 0.467877
Target:  5'- aGCCCAGCca-CCUGCUGACGg---CGa -3'
miRNA:   3'- -CGGGUCGuagGGGCGGCUGUaguaGC- -5'
26609 5' -57.5 NC_005357.1 + 33830 0.67 0.467877
Target:  5'- cGCCUAcGcCAUCCCCacggucGCCGugAcCGUCGu -3'
miRNA:   3'- -CGGGU-C-GUAGGGG------CGGCugUaGUAGC- -5'
26609 5' -57.5 NC_005357.1 + 26250 0.67 0.467877
Target:  5'- cGCCgaaGGCAcgggCaCCCGCCGGCcUgGUCGg -3'
miRNA:   3'- -CGGg--UCGUa---G-GGGCGGCUGuAgUAGC- -5'
26609 5' -57.5 NC_005357.1 + 19966 0.67 0.476958
Target:  5'- aCCCAGguUUCgggcaggCCGCCGAUGUCcgCGu -3'
miRNA:   3'- cGGGUCguAGG-------GGCGGCUGUAGuaGC- -5'
26609 5' -57.5 NC_005357.1 + 19037 0.67 0.488175
Target:  5'- aGCCCugguAGCGg--CCGCCGGCggCGUCGn -3'
miRNA:   3'- -CGGG----UCGUaggGGCGGCUGuaGUAGC- -5'
26609 5' -57.5 NC_005357.1 + 8180 0.66 0.498478
Target:  5'- cGCCCGGa--UgCUGCCGGCGauuUCAUCGc -3'
miRNA:   3'- -CGGGUCguaGgGGCGGCUGU---AGUAGC- -5'
26609 5' -57.5 NC_005357.1 + 11533 0.68 0.391417
Target:  5'- gGCCCugcgagcgGGCAUCCugauaggacugcCCGCCGG--UCAUCGa -3'
miRNA:   3'- -CGGG--------UCGUAGG------------GGCGGCUguAGUAGC- -5'
26609 5' -57.5 NC_005357.1 + 15207 0.69 0.382445
Target:  5'- cGCCgauGGCgAUUUCCGCCGACAUCGa-- -3'
miRNA:   3'- -CGGg--UCG-UAGGGGCGGCUGUAGUagc -5'
26609 5' -57.5 NC_005357.1 + 5547 0.69 0.382445
Target:  5'- cGCCCAG-GUCgCCCGCC-ACggUAUCGa -3'
miRNA:   3'- -CGGGUCgUAG-GGGCGGcUGuaGUAGC- -5'
26609 5' -57.5 NC_005357.1 + 12291 0.74 0.178388
Target:  5'- gGCCCAGCGUgCCgGCuaCGGCggCGUCGa -3'
miRNA:   3'- -CGGGUCGUAgGGgCG--GCUGuaGUAGC- -5'
26609 5' -57.5 NC_005357.1 + 35245 0.74 0.180329
Target:  5'- aGCCCAGCGUcgcCCCCGaauCCGACAagcgcccggcccuggUCAUCc -3'
miRNA:   3'- -CGGGUCGUA---GGGGC---GGCUGU---------------AGUAGc -5'
26609 5' -57.5 NC_005357.1 + 17430 0.73 0.21514
Target:  5'- cGCCCuugAGCAguggCCCCGCCaGCAUCGa-- -3'
miRNA:   3'- -CGGG---UCGUa---GGGGCGGcUGUAGUagc -5'
26609 5' -57.5 NC_005357.1 + 818 0.71 0.278709
Target:  5'- cGCCCAGC--CCuuGCCGAa--CGUCGg -3'
miRNA:   3'- -CGGGUCGuaGGggCGGCUguaGUAGC- -5'
26609 5' -57.5 NC_005357.1 + 25936 0.7 0.293091
Target:  5'- gGCCCAGCAugUCCCgCGCUuGACcuuguagccGUCGUCc -3'
miRNA:   3'- -CGGGUCGU--AGGG-GCGG-CUG---------UAGUAGc -5'
26609 5' -57.5 NC_005357.1 + 19066 0.7 0.323577
Target:  5'- -aUCAGCguGUCCUCGCCGAgGUCAcgCGa -3'
miRNA:   3'- cgGGUCG--UAGGGGCGGCUgUAGUa-GC- -5'
26609 5' -57.5 NC_005357.1 + 34261 0.69 0.373612
Target:  5'- -gCCAGCGccUUCCUggGCCG-CAUCAUCGa -3'
miRNA:   3'- cgGGUCGU--AGGGG--CGGCuGUAGUAGC- -5'
26609 5' -57.5 NC_005357.1 + 12628 0.69 0.381556
Target:  5'- cGCUCGGCAUCgCUGCUGcCGUCcuuuggcGUCGg -3'
miRNA:   3'- -CGGGUCGUAGgGGCGGCuGUAG-------UAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.