miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26610 3' -55.5 NC_005357.1 + 11407 0.79 0.100278
Target:  5'- cGCGAUUgccUCGGCCggCAAGCCCGuGGACa -3'
miRNA:   3'- cCGCUGA---AGCCGGa-GUUCGGGU-UCUG- -5'
26610 3' -55.5 NC_005357.1 + 12307 0.8 0.083722
Target:  5'- cGGCGGCguguucuggcgCGGCCUCAucGCCUggGACa -3'
miRNA:   3'- -CCGCUGaa---------GCCGGAGUu-CGGGuuCUG- -5'
26610 3' -55.5 NC_005357.1 + 12616 0.72 0.301381
Target:  5'- uGGuCGACgauucaUCGGCaUCGAGCgCGAGACa -3'
miRNA:   3'- -CC-GCUGa-----AGCCGgAGUUCGgGUUCUG- -5'
26610 3' -55.5 NC_005357.1 + 12911 0.67 0.580986
Target:  5'- uGGCGAUgcgcUCGGCCgc--GCCCAuaACg -3'
miRNA:   3'- -CCGCUGa---AGCCGGaguuCGGGUucUG- -5'
26610 3' -55.5 NC_005357.1 + 14909 0.68 0.492958
Target:  5'- cGGCGAuCUgcugcuggcCGGCCUCAAgugccgacugcgcGCCCAAcucGGCg -3'
miRNA:   3'- -CCGCU-GAa--------GCCGGAGUU-------------CGGGUU---CUG- -5'
26610 3' -55.5 NC_005357.1 + 15158 0.74 0.213654
Target:  5'- cGGCGaACUgcgguucauugccUCGGCCaaGAGCCUggGGCg -3'
miRNA:   3'- -CCGC-UGA-------------AGCCGGagUUCGGGuuCUG- -5'
26610 3' -55.5 NC_005357.1 + 17836 0.67 0.533626
Target:  5'- gGGCGGgUUgaugcccgccaccgUGGCCUCGucGCCCAgguAGGCc -3'
miRNA:   3'- -CCGCUgAA--------------GCCGGAGUu-CGGGU---UCUG- -5'
26610 3' -55.5 NC_005357.1 + 18371 0.68 0.473161
Target:  5'- cGGCGGCgaggUUGGCCUUGccgauGGCgCCGGuGGCg -3'
miRNA:   3'- -CCGCUGa---AGCCGGAGU-----UCG-GGUU-CUG- -5'
26610 3' -55.5 NC_005357.1 + 18473 0.66 0.63702
Target:  5'- cGGCGGCgUCGGCCgauucGUCCAccguGAUg -3'
miRNA:   3'- -CCGCUGaAGCCGGaguu-CGGGUu---CUG- -5'
26610 3' -55.5 NC_005357.1 + 18879 0.69 0.432856
Target:  5'- cGGCGAUgUCGGCCg-AGGCCaucGACc -3'
miRNA:   3'- -CCGCUGaAGCCGGagUUCGGguuCUG- -5'
26610 3' -55.5 NC_005357.1 + 19223 0.68 0.494011
Target:  5'- cGGacaGGCUguugaagcgCGGCgUCAGGCCCAuGAa -3'
miRNA:   3'- -CCg--CUGAa--------GCCGgAGUUCGGGUuCUg -5'
26610 3' -55.5 NC_005357.1 + 20096 0.67 0.523877
Target:  5'- uGGCGACUUCGGaaaaggcGCCCAGcACa -3'
miRNA:   3'- -CCGCUGAAGCCggaguu-CGGGUUcUG- -5'
26610 3' -55.5 NC_005357.1 + 21106 0.69 0.431874
Target:  5'- cGGUGGC--CGGCaUCAAGCCCGAagugcucGACa -3'
miRNA:   3'- -CCGCUGaaGCCGgAGUUCGGGUU-------CUG- -5'
26610 3' -55.5 NC_005357.1 + 22247 0.66 0.63702
Target:  5'- gGGCGACgacaaGGCg--AAGCCgCAAGGCg -3'
miRNA:   3'- -CCGCUGaag--CCGgagUUCGG-GUUCUG- -5'
26610 3' -55.5 NC_005357.1 + 23215 0.7 0.385411
Target:  5'- cGGUGAaUUCGGCCUCGgccucGGCCaccGACc -3'
miRNA:   3'- -CCGCUgAAGCCGGAGU-----UCGGguuCUG- -5'
26610 3' -55.5 NC_005357.1 + 24581 0.68 0.48249
Target:  5'- gGGCGACga-GGCCacgguggcgggcaUCAAcccGCCCGAGGg -3'
miRNA:   3'- -CCGCUGaagCCGG-------------AGUU---CGGGUUCUg -5'
26610 3' -55.5 NC_005357.1 + 26971 0.68 0.494011
Target:  5'- cGGCaGCUUCGGCCaaGGGCgcgUCAAGAa -3'
miRNA:   3'- -CCGcUGAAGCCGGagUUCG---GGUUCUg -5'
26610 3' -55.5 NC_005357.1 + 27427 0.68 0.494011
Target:  5'- uGGCGcaccGCgcccggCGGCCgCAGGCCCu-GGCg -3'
miRNA:   3'- -CCGC----UGaa----GCCGGaGUUCGGGuuCUG- -5'
26610 3' -55.5 NC_005357.1 + 27839 0.66 0.625782
Target:  5'- cGGUGGCgcCGGCCgcgCcgcuGCUCAAGAa -3'
miRNA:   3'- -CCGCUGaaGCCGGa--Guu--CGGGUUCUg -5'
26610 3' -55.5 NC_005357.1 + 28897 0.68 0.494011
Target:  5'- aGGCGGCcgacagUUCGGCgCggacggCAAaccgcuuaccucGCCCAAGGCg -3'
miRNA:   3'- -CCGCUG------AAGCCG-Ga-----GUU------------CGGGUUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.