miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26610 5' -56.9 NC_005357.1 + 7545 0.66 0.54659
Target:  5'- -gGCGgcGUGCUCGauccgcGGCGCCaccGGCu -3'
miRNA:   3'- gaCGCuaCGCGAGU------UCGCGGacaCCG- -5'
26610 5' -56.9 NC_005357.1 + 39162 0.66 0.54659
Target:  5'- -gGCGuUGCGCgggaaauguuccUgAAGUGCCUGcucgGGCa -3'
miRNA:   3'- gaCGCuACGCG------------AgUUCGCGGACa---CCG- -5'
26610 5' -56.9 NC_005357.1 + 18375 0.66 0.54659
Target:  5'- -gGCGAgguugGC-CUUGccgauGGCGCCgGUGGCg -3'
miRNA:   3'- gaCGCUa----CGcGAGU-----UCGCGGaCACCG- -5'
26610 5' -56.9 NC_005357.1 + 25048 0.66 0.535709
Target:  5'- gUGCGucgGCGCgaugCAGGCauaCCUGUcgcaGGCg -3'
miRNA:   3'- gACGCua-CGCGa---GUUCGc--GGACA----CCG- -5'
26610 5' -56.9 NC_005357.1 + 22713 0.66 0.535709
Target:  5'- -gGCGAUGCGC---GGCGCCUcuauGCa -3'
miRNA:   3'- gaCGCUACGCGaguUCGCGGAcac-CG- -5'
26610 5' -56.9 NC_005357.1 + 4580 0.66 0.535709
Target:  5'- gCUGCucGGUGCGC-CAGGCGaggaaCUGcucGGCc -3'
miRNA:   3'- -GACG--CUACGCGaGUUCGCg----GACa--CCG- -5'
26610 5' -56.9 NC_005357.1 + 29681 0.66 0.524904
Target:  5'- -aGC---GCGC-CAAGCGUCUG-GGCg -3'
miRNA:   3'- gaCGcuaCGCGaGUUCGCGGACaCCG- -5'
26610 5' -56.9 NC_005357.1 + 39360 0.66 0.514183
Target:  5'- aUG-GGUGCgGCUCGGGCGCUUGacGUg -3'
miRNA:   3'- gACgCUACG-CGAGUUCGCGGACacCG- -5'
26610 5' -56.9 NC_005357.1 + 39704 0.66 0.514183
Target:  5'- -cGgGccGCGCUCAAGCGUCc--GGCc -3'
miRNA:   3'- gaCgCuaCGCGAGUUCGCGGacaCCG- -5'
26610 5' -56.9 NC_005357.1 + 41611 0.67 0.462052
Target:  5'- uCUGCGc-GCGCUCAAGCccagccaCCUGcugacGGCg -3'
miRNA:   3'- -GACGCuaCGCGAGUUCGc------GGACa----CCG- -5'
26610 5' -56.9 NC_005357.1 + 12820 0.67 0.455981
Target:  5'- -aGCGcccgGCGCUgGAcaacuggcaaaccgcGCGCCUG-GGCg -3'
miRNA:   3'- gaCGCua--CGCGAgUU---------------CGCGGACaCCG- -5'
26610 5' -56.9 NC_005357.1 + 26168 0.67 0.451958
Target:  5'- uCUGCGAUGCGgUCGcAGauuUCgGUGGCg -3'
miRNA:   3'- -GACGCUACGCgAGU-UCgc-GGaCACCG- -5'
26610 5' -56.9 NC_005357.1 + 250 0.67 0.451958
Target:  5'- -gGCGGUaGCGaaucccCAGGCGCUUGaGGCa -3'
miRNA:   3'- gaCGCUA-CGCga----GUUCGCGGACaCCG- -5'
26610 5' -56.9 NC_005357.1 + 19477 0.67 0.441986
Target:  5'- -aGCu-UGCGC-CAGGUGCCgGUGGg -3'
miRNA:   3'- gaCGcuACGCGaGUUCGCGGaCACCg -5'
26610 5' -56.9 NC_005357.1 + 7228 0.68 0.43214
Target:  5'- uCUGCGccGCGCUCAcccucGGCGa-UGUcGGCc -3'
miRNA:   3'- -GACGCuaCGCGAGU-----UCGCggACA-CCG- -5'
26610 5' -56.9 NC_005357.1 + 4376 0.68 0.43214
Target:  5'- -gGCgGAUGCGCagcCAGGCGCCgucgcgccgGGCc -3'
miRNA:   3'- gaCG-CUACGCGa--GUUCGCGGaca------CCG- -5'
26610 5' -56.9 NC_005357.1 + 13928 0.68 0.412838
Target:  5'- -gGCGAUGuCGCgc-AGCGCC-GUGGa -3'
miRNA:   3'- gaCGCUAC-GCGaguUCGCGGaCACCg -5'
26610 5' -56.9 NC_005357.1 + 35635 0.68 0.412838
Target:  5'- -aGCGAUGCGCaagUCAAGgCGCUgaaccaGGCc -3'
miRNA:   3'- gaCGCUACGCG---AGUUC-GCGGaca---CCG- -5'
26610 5' -56.9 NC_005357.1 + 5033 0.68 0.403389
Target:  5'- -cGCGAUGCcccGCUCGauGGCGuCCUGcuUGaGCa -3'
miRNA:   3'- gaCGCUACG---CGAGU--UCGC-GGAC--AC-CG- -5'
26610 5' -56.9 NC_005357.1 + 28760 0.68 0.394078
Target:  5'- -cGCGGUGCGCUUcucGGCGCgcacGGCg -3'
miRNA:   3'- gaCGCUACGCGAGu--UCGCGgacaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.