miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26610 5' -56.9 NC_005357.1 + 4506 0.69 0.375879
Target:  5'- -cGCGcgGCGCcaCAGGCGCUUGaGcGCa -3'
miRNA:   3'- gaCGCuaCGCGa-GUUCGCGGACaC-CG- -5'
26610 5' -56.9 NC_005357.1 + 8536 0.7 0.324776
Target:  5'- -gGCGAUGaaaCGCUCGAcagccGCGCCgaUGGCg -3'
miRNA:   3'- gaCGCUAC---GCGAGUU-----CGCGGacACCG- -5'
26610 5' -56.9 NC_005357.1 + 31835 0.7 0.316779
Target:  5'- aUGCGGUGCagGCUgc-GCGCCUG-GGUa -3'
miRNA:   3'- gACGCUACG--CGAguuCGCGGACaCCG- -5'
26610 5' -56.9 NC_005357.1 + 40414 0.71 0.279025
Target:  5'- -cGCGAcuuCGCcagCGAGCGCCUG-GGCc -3'
miRNA:   3'- gaCGCUac-GCGa--GUUCGCGGACaCCG- -5'
26610 5' -56.9 NC_005357.1 + 10742 0.71 0.271918
Target:  5'- -gGCGGUGCuGCagCAguuacuGGUGCUUGUGGCc -3'
miRNA:   3'- gaCGCUACG-CGa-GU------UCGCGGACACCG- -5'
26610 5' -56.9 NC_005357.1 + 16108 0.75 0.149925
Target:  5'- -cGCGGUGCGCgUCAAgaccGUGCCUGUccguugauGGCa -3'
miRNA:   3'- gaCGCUACGCG-AGUU----CGCGGACA--------CCG- -5'
26610 5' -56.9 NC_005357.1 + 39162 0.66 0.54659
Target:  5'- -gGCGuUGCGCgggaaauguuccUgAAGUGCCUGcucgGGCa -3'
miRNA:   3'- gaCGCuACGCG------------AgUUCGCGGACa---CCG- -5'
26610 5' -56.9 NC_005357.1 + 22713 0.66 0.535709
Target:  5'- -gGCGAUGCGC---GGCGCCUcuauGCa -3'
miRNA:   3'- gaCGCUACGCGaguUCGCGGAcac-CG- -5'
26610 5' -56.9 NC_005357.1 + 4580 0.66 0.535709
Target:  5'- gCUGCucGGUGCGC-CAGGCGaggaaCUGcucGGCc -3'
miRNA:   3'- -GACG--CUACGCGaGUUCGCg----GACa--CCG- -5'
26610 5' -56.9 NC_005357.1 + 12820 0.67 0.455981
Target:  5'- -aGCGcccgGCGCUgGAcaacuggcaaaccgcGCGCCUG-GGCg -3'
miRNA:   3'- gaCGCua--CGCGAgUU---------------CGCGGACaCCG- -5'
26610 5' -56.9 NC_005357.1 + 5033 0.68 0.403389
Target:  5'- -cGCGAUGCcccGCUCGauGGCGuCCUGcuUGaGCa -3'
miRNA:   3'- gaCGCUACG---CGAGU--UCGC-GGAC--AC-CG- -5'
26610 5' -56.9 NC_005357.1 + 25048 0.66 0.535709
Target:  5'- gUGCGucgGCGCgaugCAGGCauaCCUGUcgcaGGCg -3'
miRNA:   3'- gACGCua-CGCGa---GUUCGc--GGACA----CCG- -5'
26610 5' -56.9 NC_005357.1 + 4376 0.68 0.43214
Target:  5'- -gGCgGAUGCGCagcCAGGCGCCgucgcgccgGGCc -3'
miRNA:   3'- gaCG-CUACGCGa--GUUCGCGGaca------CCG- -5'
26610 5' -56.9 NC_005357.1 + 29681 0.66 0.524904
Target:  5'- -aGC---GCGC-CAAGCGUCUG-GGCg -3'
miRNA:   3'- gaCGcuaCGCGaGUUCGCGGACaCCG- -5'
26610 5' -56.9 NC_005357.1 + 7545 0.66 0.54659
Target:  5'- -gGCGgcGUGCUCGauccgcGGCGCCaccGGCu -3'
miRNA:   3'- gaCGCuaCGCGAGU------UCGCGGacaCCG- -5'
26610 5' -56.9 NC_005357.1 + 250 0.67 0.451958
Target:  5'- -gGCGGUaGCGaaucccCAGGCGCUUGaGGCa -3'
miRNA:   3'- gaCGCUA-CGCga----GUUCGCGGACaCCG- -5'
26610 5' -56.9 NC_005357.1 + 38881 0.69 0.332923
Target:  5'- gCUGC--UGCGCUauucggcGGCGCCUGgaacGGCa -3'
miRNA:   3'- -GACGcuACGCGAgu-----UCGCGGACa---CCG- -5'
26610 5' -56.9 NC_005357.1 + 18375 0.66 0.54659
Target:  5'- -gGCGAgguugGC-CUUGccgauGGCGCCgGUGGCg -3'
miRNA:   3'- gaCGCUa----CGcGAGU-----UCGCGGaCACCG- -5'
26610 5' -56.9 NC_005357.1 + 39360 0.66 0.514183
Target:  5'- aUG-GGUGCgGCUCGGGCGCUUGacGUg -3'
miRNA:   3'- gACgCUACG-CGAGUUCGCGGACacCG- -5'
26610 5' -56.9 NC_005357.1 + 39704 0.66 0.514183
Target:  5'- -cGgGccGCGCUCAAGCGUCc--GGCc -3'
miRNA:   3'- gaCgCuaCGCGAGUUCGCGGacaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.